UFO02339.5prime Sequence
1078 bp (992 high quality bases) assembled on 2008-12-21
> UFO02339.5prime
CAGTCGACATGCTGGGTGTTGTTGGGGTGCTCCTCCTGGTGGCGTTCGCC
ACACTGCTGCTGTGGGATTTCCTCTGGCGCAGGCGGGGCAATGGTATATT
GCCGGGTCCGCGGCCACTTCCCTTCCTGGGCAACCTGCTCATGTATCGCG
GTCTAGATCCTGAACAAATAATGGACTTTGTCAAGAAGAACCAGCGCAAG
TACGGTCGCCTTTACAGGGTGTGGATTCTCCACCAGTTGGCCGTCTTCTC
CACGGATCCCCGAGACATTGAGTTCGTCTTGAGCAGCCAACAGCATATAA
CCAAGAATAATCTGTACAAGCTACTTAACTGCTGGCTGGGCGATGGATTG
CTGATGAGCACGGGCAGGAAGTGGCATGGACGCAGAAAGATCATCACGCC
CACCTTCCACTTCAAGATTTTGGAACAGTTCGTCGAGATATTCGACCAAC
AAAGCGCCGTAATGGTGGAGCAGCTTCAGTCGCGCGCCGACGGCATGACT
CCCATTAACATCTTTCCGGTGATTTGTCTCACTGCCCTGGATATAATCGC
AGAAACTGCAATGGGCACAAAAATCAATGCCCAAAAAAATCCCAATCTGC
CCTATGTCCAGGCTGTCAATGATGTCACCAACATCTTGATTAAACGTTTT
ATCCACGCTTGGCAGCGGGTGGACTGGATTTTCCGGCTAACGCAGCCAAC
AGAAGCTAAACGCCAGGACAAAGCTATCAAGGTAATGCACGACTTTACCG
AGAACATTATCCGTGAGCGGCGTGAAACGCTGGTTAACAACTCGAAAGGA
AACAACCCCAGAAGAGGAAGTTAATTTCTTGGCCAAAAGCGACGGATGGC
TCTGCTGGATGTGCTGCTGCAGTCCACAATCGATGGCGCCCCGTTGAGCG
ATGAGATATCCGCGAAGAGTTGACACGTTTATGTCGAGGCCATGACACGA
CTACCTCGGCGATTCATTCTGTTTATAATGAATCTCAAGCATCCGGAGTC
AACAGCGTCTGCAGCAGAGATCCGCGACGTCTCGGCGAGATCGAAGAGCC
AGTAACCTCCTGAATCTTGGTTAACCTG
UFO02339.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:58:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cyp4d2-RB | 2467 | CG3466-RB | 902..1955 | 9..1050 | 4865 | 98.4 | Plus |
| Cyp4d2-RA | 1582 | CG3466-RA | 17..1070 | 9..1050 | 4865 | 98.4 | Plus |
| Cyp4d14-RB | 1694 | CG3540-RB | 923..1051 | 831..955 | 260 | 82.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:58:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 2177151..2177537 | 166..552 | 1920 | 99.7 | Plus |
| X | 23542271 | X | 2177721..2178138 | 623..1031 | 1520 | 96.4 | Plus |
| X | 23542271 | X | 2176907..2177063 | 9..165 | 785 | 100 | Plus |
| X | 23542271 | X | 2177592..2177663 | 551..622 | 360 | 100 | Plus |
| X | 23542271 | X | 2174118..2174186 | 899..831 | 210 | 87 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:58:14 has no hits.
UFO02339.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:24:20 Download gff for
UFO02339.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp4d2-RA | 8..1078 | 1..1057 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:12:40 Download gff for
UFO02339.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp4d2-RA | 8..1078 | 1..1057 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:31:22 Download gff for
UFO02339.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp4d2-RA | 8..1078 | 1..1057 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:31:22 Download gff for
UFO02339.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 2176898..2177063 | 1..165 | 97 | -> | Plus |
| X | 2177151..2177537 | 166..552 | 99 | -> | Plus |
| X | 2177594..2177663 | 553..622 | 100 | -> | Plus |
| X | 2177721..2178168 | 623..1057 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:12:40 Download gff for
UFO02339.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 2070931..2071096 | 1..165 | 97 | -> | Plus |
| arm_X | 2071184..2071570 | 166..552 | 99 | -> | Plus |
| arm_X | 2071627..2071696 | 553..622 | 100 | -> | Plus |
| arm_X | 2071754..2072201 | 623..1057 | 96 | | Plus |
