UFO02340.5prime Sequence
1116 bp (1000 high quality bases) assembled on 2008-12-21
> UFO02340.5prime
CAGTCGACATGAGAGAATACAGCCTGTGTATGATTGTGATAGCAGCTTTC
ATTGCCAGCCAGCTGGACAGCACCTCAGCCCTCCAGTGCTATTCGTGCAC
ATCGACGACGAATGACACTGGAAATTGTTTAACGAGTCCATCTACTCAAA
CTTCTATAGAGTGTGATAATGAATGCTATACTCTTATTAACGCAGGAACT
CTAACTCGTGGCTGCTTGATTAATGGCACTGCGTGCACCTTACCATCCTG
CTCGACCTGCAAGGAAGACAATTGCAATTTGAATTTGGTGTGCCAGCAGT
GCCTCGGCGAAGCGAATTGCGCCACGACCAACGTGACGGATACGCAATAC
AATGCAGTGTGCCCCAATAATGGACAGGTCTGCGTGAATCAGTTGAATGA
CAACAAGACGGTGACCCGTCAATGTGGTGACCCCTGTGCTGCTGGAACGG
AATCCACGTGCTCCTCATGCTCGGCATCCCTGTGCAATGTGGGACTATTC
CCCGCCAATCGTCGCCAGTGCTATAATTGCTCAGGAGAGAACTGCAATGC
GGTCTCAAATACCTTGGTCGCGGGATGTAGTCAAATCGATGCCGGGTGCT
TCACCACCGGAACGTCTGCGAGCAACATGACCCGTGGTTGCACATCGGCC
ACCACGGAAATCAAGTGTGCGTCGGACAGCACTGATCCCAGTTGCCTCGT
CTGCAACTCCGACTTTTGCAATAGTCCGACCTACGAACGAGAGGCCGGTT
CCTGTATCATTTGCGAGAACTGTGCGGAGCAACAGGTTGCTACCAATGCG
AAGTCCTGCGGACAGGCCAAGTACAACCAGGAAGTCGGGTGTTATACCAT
GACCTCAGGAACCAATGTTACCCGAGGGTGCCTAAACACCTTGGAGGCTG
GCTGCTCTACAACCAATGCCTGCACTTCCTGCTCCGAAATGGCTGCATGT
GCTGCGGCGAGTTCCAGTGCATTACATGCATTTCGATGAGTTTCGGCTGC
TGTCGGCCAATATTCGGACCCGCCTCCTTTGATCACTGCCCATTGAACGT
GCTACAGCGGGTCTGATGACTTGGAGTGCAGGATGTTTACGCTCCAGCAC
CTGGATGCTACGCATG
UFO02340.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:37:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10650-RB | 1784 | CG10650-RB | 80..1177 | 8..1088 | 5010 | 98 | Plus |
| CG10650-RA | 1527 | CG10650-RA | 80..1177 | 8..1088 | 5010 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:37:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 18994227..18995023 | 986..194 | 3785 | 99.5 | Minus |
| 2L | 23513712 | 2L | 18995601..18995712 | 196..85 | 560 | 100 | Minus |
| 2L | 23513712 | 2L | 18995779..18995855 | 84..8 | 385 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:37:28 has no hits.
UFO02340.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:24:18 Download gff for
UFO02340.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10650-RA | 69..1180 | 1..1093 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:09:13 Download gff for
UFO02340.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10650-RA | 73..1184 | 1..1093 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:08:54 Download gff for
UFO02340.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10650-RA | 73..1184 | 1..1093 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:08:54 Download gff for
UFO02340.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 18995602..18995712 | 85..195 | 100 | <- | Minus |
| 2L | 18995779..18995858 | 1..84 | 95 | | Minus |
| 2L | 18994144..18995021 | 196..1061 | 97 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:09:13 Download gff for
UFO02340.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 18994144..18995021 | 196..1061 | 97 | <- | Minus |
| arm_2L | 18995602..18995712 | 85..195 | 100 | <- | Minus |
| arm_2L | 18995779..18995858 | 1..84 | 95 | | Minus |
