UFO02343.5prime Sequence
1146 bp (1028 high quality bases) assembled on 2008-12-21
> UFO02343.5prime
CAGTCGACATGCTGAAAACCGCTGTTAGCCGCTTTTTACAAATTAGTTCA
GTACAATGTGGCGGCCGGGCGAATTCTGTTCGCAACATCAACCTGATTCC
CATGGTGGTCGAGCAAACTGGCCGCGGTGAGCGGGCCTACGACATATTCT
CACGTCTGCTGAAGGAGCGTATAATTTGCCTTATGGGCAACATAACCGAC
GACATCAGTTCGACTGTGGTGGCTCAACTGCTGTTCCTGCAATCGGAGAA
CGTCAACAAACCGATCCATCTGTACATCAATTCGCCCGGCGGTGTTGTTA
CAGCGGGTTTGGCGATCTACGATACGATGCAGTACGTCAAGCCACCCATT
GCAACTTGGTGCGTTGGACAGGCCTGCTCGATGGGATCCCTCCTGCTCGC
GGCCGGTGCTCCTGGCATGCGGTACTCCCTACCCAACGCGCGAATAATGA
TACATCAGCCCTCTGGTGGCGCACAAGGCCAAGCCACAGACATCCTAATA
CATGCTGAGGAAATTATCAAAATCAAGCGCCAGCTGACCAACATCTACGT
GAAGCACGCCAAGAATACGTACGAGGAGATGTCCGGACGCATGGAGCGCG
ACCACTTCATGACCCCCGAGGAGGCAAAAGTGCTGGGCATCATTGACCAC
GTGCTTGAACATCCTCCAGAGACTGTTTCCGAAACGGGACCCGCGTCGGA
CGGCGGCGTCACCTCCGGCAAAGCCGTGCCCGAGGAGTGCGAGAAGAAGA
GAAGCAAGCACGCAGCCGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGG
GCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAA
CTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAA
AAACGCCCGGCGGCAACCGAGCGTTCTGAACAATCCAGATGGAGTTCTGA
GGTCATTACTGGATCTATCACAGGAGTCCAAGCGAGCCTCGATATCAATT
ACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTATTCATTAGCATTCT
GCCGACTTGCAGGCCATCAAAACGCATGATGAACTGATTCGCAGGCCGCA
TCAGACTTGTCGCCTGCTATTAAATTGGCATGGGAACGGGCCAAGA
UFO02343.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:37:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5045-RB | 1175 | CG5045-RB | 120..879 | 8..767 | 3785 | 99.9 | Plus |
| CG5045-RA | 973 | CG5045-RA | 120..879 | 8..767 | 3785 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:37:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10357010..10357436 | 51..477 | 2135 | 100 | Plus |
| 2L | 23513712 | 2L | 10357485..10357782 | 470..767 | 1445 | 99 | Plus |
| 2L | 23513712 | 2L | 10356914..10356959 | 8..53 | 230 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:37:19 has no hits.
UFO02343.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:24:15 Download gff for
UFO02343.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5045-RA | 166..939 | 1..777 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:09:06 Download gff for
UFO02343.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5045-RA | 114..887 | 1..777 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:08:47 Download gff for
UFO02343.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5045-RA | 114..887 | 1..777 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:08:47 Download gff for
UFO02343.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10356908..10356956 | 1..50 | 94 | -> | Plus |
| 2L | 10357010..10357435 | 51..476 | 100 | -> | Plus |
| 2L | 10357492..10357790 | 477..777 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:09:06 Download gff for
UFO02343.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10356908..10356956 | 1..50 | 94 | -> | Plus |
| arm_2L | 10357010..10357435 | 51..476 | 100 | -> | Plus |
| arm_2L | 10357492..10357790 | 477..777 | 98 | == | Plus |
