UFO02345.5prime Sequence
579 bp (47 high quality bases) assembled on 2008-12-21
> UFO02345.5prime
CAATCCACATGGCTCACACTATTACGCGGAGAACTTGCCGCTTTCTGATG
GTGCTCCTCATCCGGGGCAGCGCTTGCGGTAATTTGGTGGCCAGTGGTAG
TGCTGGCAGTCCACCCTCTAATGAACCAGGAGGCGGAGGCCTGTCCGAAC
AGGTGGTACTGGACCAACTTACCTAGAGCGACCTGTACTGTTTTTTCCAC
CGCGCCTGGCCGTCGCTGCAGACCTCGTGGGGCAAGCGGACCTCCAGCGG
ATACGTCCACGATCCGGACATCTACATGACCGGCCACTTTGTTCCGCTGG
TAATCACGGATGGCACGAACACCATCGATTGGGACACCTTCGAGCGGCTG
GCCAGTGGACAATCCGCACAGCAGCAGCAGCAACAGCCGCTCCAGCAGCA
ATCGCAATCTGGCGAGGATTTCGATGATCTCGCATGCGAACCGGATGTGG
AAAAGCGGACCTGGAAGAGCATGAACGTCGCTTGGTGAAAGAGGAGGCAG
GGCAGGGCTGGAACAAGTTCAGGGGCGCCTGGATAAGCGCGAACCCGCCT
GGAACAACCTGAAGGGCATGTGGGGCAAA
UFO02345.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:23:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mip-RA | 1396 | CG6456-RA | 290..862 | 9..579 | 2365 | 94.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:23:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 17345481..17346053 | 579..9 | 2315 | 94.4 | Minus |
Blast to na_te.dros performed 2014-11-28 19:23:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6680..6762 | 323..400 | 131 | 68.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2342..2383 | 359..400 | 128 | 83.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6793..6826 | 368..401 | 125 | 85.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6796..6834 | 368..406 | 123 | 79.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6751..6783 | 368..400 | 120 | 84.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6772..6804 | 368..400 | 120 | 84.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6844..6876 | 368..400 | 120 | 84.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2634..2671 | 369..406 | 118 | 78.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6826..6859 | 368..401 | 116 | 82.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1554..1585 | 369..400 | 115 | 84.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1557..1595 | 369..407 | 114 | 76.9 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1081..1119 | 368..406 | 114 | 76.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2345..2377 | 368..400 | 111 | 81.8 | Plus |
| gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 977..1009 | 368..400 | 111 | 81.8 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1078..1119 | 359..400 | 110 | 79.1 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1110..1147 | 370..407 | 109 | 76.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2943..2978 | 372..407 | 108 | 77.8 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1106..1162 | 353..411 | 108 | 73.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2630..2663 | 368..401 | 107 | 79.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6798..6837 | 362..400 | 107 | 77.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6533..6573 | 369..409 | 106 | 73.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2454..2492 | 369..407 | 105 | 74.4 | Plus |
UFO02345.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:24:14 Download gff for
UFO02345.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mip-RA | 286..855 | 9..576 | 94 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:30:52 Download gff for
UFO02345.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mip-RA | 290..859 | 9..576 | 94 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:08:27 Download gff for
UFO02345.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mip-RA | 290..859 | 9..576 | 94 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:08:27 Download gff for
UFO02345.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 17345484..17346053 | 9..576 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:30:52 Download gff for
UFO02345.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 17338584..17339153 | 9..576 | 94 | | Minus |
