UFO02346.5prime Sequence
1094 bp (1017 high quality bases) assembled on 2008-12-21
> UFO02346.5prime
CAGTCGACATGGCGATCGGTTCCGTAGTTTTTGCCGCCGCAGGCTTGCTG
CTCCTCCTCCTCCCGCCGTCGCATCAGCAAGCGACAGCGGGAAACATTGG
ATCCCAGTGGCGCGACGATGAGGTCCATTTCAACCGCACCCTGGACTCCA
TTTTGGTGCCACGCGTCGTTGGCAGTCGGGGACATCAGCAGGTGCGCGAG
TACCTGGTCCAATCGCTGAACGGCCTTGGCTTCCAAACGGAAGTGGATGA
GTTCAAGCAGAGAGTTCCAGTTTTCGGCGAACTCACGTTTGCCAACGTAG
TGGGCACAATCAATCCCCAGGCTCAGAACTTTCTCGCTCTGGCCTGCCAC
TACGACAGCAAGTACTTCCCCAATGATCCCGGCTTTGTGGGCGCCACTGA
CTCCGCCGTGCCCTGTGCCATTCTGTTGAACACCGCCAAGACCTTGGGCG
CGTATCTGCAGAAAGAGTTTCGCAATCGCAGCGATGTGGGACTTATGCTC
ATATTCTTCGATGGCGAGGAGGCCTTTAAGGAGTGGACCGATGCGGACTC
TGTATACGGATCAAAGCATCTGGCCGCGAAGTTGGCTAGCAAACGCAGTG
GTTCCCAGGCGCAACTAGCTCCACGCAATATAGATCGAATTGAAGTTCTG
GTGCTGCTGGATCTAATTGGGGCGCGGAATCCCAAGTTCTCCAGTTTTTA
TGAAAACACCGACGGACTGCACTCCAGTCTCGTGCAGATTGAGAAATCTC
TGCGCACTGCCGGCCAGCTGGAGGGCAATAACAATATGTTTTTAAGTCGT
GTCAGCGGTGGTCTAGTCGACGATGATCATCGACCGTTTTTAGATGAGAT
GTTCCTGTGCTGCATTTGGTAGCCACTCCTTTCCCAGACGTCTGGCACAC
GCCTCGGGACATGCCGCAATCTGCACTGTCTTCATACGCATTTCAACGTG
TTTCGTATTTCGTTATCATACCTTAGCGCACACGTCACAGTGATTTGCGT
TTTAACGAACAGCAGCTTCTAGAACATCGTTGGCGCGGGCCAGTTATGGT
CTAATCTAATCTAATCATATCTATCCAACTAGCTAGAGATCTGT
UFO02346.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:40:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| QC-RA | 1141 | CG32412-RA | 36..1055 | 9..1011 | 4655 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:40:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 5901796..5902104 | 497..189 | 1545 | 100 | Minus |
| 3L | 28110227 | 3L | 5901153..5901360 | 849..642 | 1040 | 100 | Minus |
| 3L | 28110227 | 3L | 5901416..5901561 | 642..497 | 730 | 100 | Minus |
| 3L | 28110227 | 3L | 5902157..5902255 | 194..96 | 495 | 100 | Minus |
| 3L | 28110227 | 3L | 5902335..5902421 | 95..9 | 435 | 100 | Minus |
| 3L | 28110227 | 3L | 5901037..5901101 | 911..847 | 325 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:40:18 has no hits.
UFO02346.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:24:27 Download gff for
UFO02346.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32412-RA | 21..979 | 1..953 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:35:54 Download gff for
UFO02346.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| QC-RA | 29..987 | 1..953 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:11:05 Download gff for
UFO02346.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| QC-RA | 29..987 | 1..953 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:11:05 Download gff for
UFO02346.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 5900989..5901099 | 850..953 | 92 | <- | Minus |
| 3L | 5901153..5901360 | 642..849 | 100 | <- | Minus |
| 3L | 5901417..5901560 | 498..641 | 100 | <- | Minus |
| 3L | 5901796..5902101 | 192..497 | 100 | <- | Minus |
| 3L | 5902160..5902255 | 96..191 | 100 | <- | Minus |
| 3L | 5902335..5902428 | 1..95 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:35:54 Download gff for
UFO02346.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 5894089..5894199 | 850..953 | 92 | <- | Minus |
| arm_3L | 5894253..5894460 | 642..849 | 100 | <- | Minus |
| arm_3L | 5894517..5894660 | 498..641 | 100 | <- | Minus |
| arm_3L | 5894896..5895201 | 192..497 | 100 | <- | Minus |
| arm_3L | 5895260..5895355 | 96..191 | 100 | <- | Minus |
| arm_3L | 5895435..5895528 | 1..95 | 95 | | Minus |
