UFO02348.5prime Sequence
1110 bp (1002 high quality bases) assembled on 2008-12-21
> UFO02348.5prime
CAGTCGACATGACGGACTACACGGAATACGTGGAAACCGCCTGGAAGTAT
GCGGAATGGCTACCTTACCTCCTCGTCTCCTACGTGGTAGTCACCCTGCT
GCCGAAGTCCCTCATCCGGATGAAACGCTTCGCGGACGCGGACTACGAGG
CCAACAGGAACATGTTTCACCGCTGCTACGGCCCAGAGCTATGCTGCCAC
GTTCTGGGCCAGGAGCAGGTCGCCGGAAAGGTGAAGCCCAAGGCCAGGAA
GCCAGTGACCCGGGTGTATCCCAAGCGTCAGCAGGTGGCGCCCAAAGCGG
AGCTACCACCTCCTAGTCCAGCGCCCGTTAAGCGGAGCAACGTCACCAAG
ATAGCCAGGATGTTTGAGACGGGCAACACGCGCCAGGTGAGCCGCGTTGC
GCCCATAACGCTTCCCGAGATCAGGATGTTCGGAGCAAGCGATGAGTCCA
GAGACTCGACGCCCTGCGTCTCGCGGAAAACCAGCATCGCCAGTCAGCTC
TCGGCTCAGCTGCAGCACATCGAGCAGACGATGCACCTGTGGCAGGAACT
GGAGGAGGAGCCCTCCAAGAAGGCATCCAGCCACAACGATTGGGAGCCCA
TGGCAGTGCCGGTTCCAAGACGAACCCGTGGTACCTCTGCCACGCCCTCC
ACGGCCTCCCCGCTCTCCAGTTCCCCGGAACTGGAGCACTCCCGATCTCC
GGTTCTCCTGAGGAAGCCGCCTTCCCTGTGCCTGCAGACCAGCATGGAGG
ATATATTCCAGGTGATCGCCCGGAGTGCCGAGGAGCCGGAAGACTGCCCG
GACTGCCAGTGCCTCTCGCCGGTGACCAGCATCGATGATATTCTCTCCGA
GCGGAGGTTCTCACGCCCCCTGTCCGCCTACTCCATCACCGATCTCCTCA
CCGAGAGCAGGCCTCGTGTATCGAGAGACCACGTACATCAACGAAACCAG
AGCAGCTTTCTAGACATTCGTTTGGCGCGCGGGCCCAGTAGTGTCATATC
ATATCTAATCATATCATATCCAACTAGCCTAGGAATCCTGGTCATGACTA
TGCTGGATTCTCACCCATAAAACGCCGGCGGCACGAACGTTCTGAACATC
ATGATCTGGA
UFO02348.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:58:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1146-RD | 1882 | CG1146-RD | 391..1336 | 8..951 | 4665 | 99.7 | Plus |
| CG1146-RA | 1903 | CG1146-RA | 412..1357 | 8..951 | 4665 | 99.7 | Plus |
| CG1146-RC | 1721 | CG1146-RC | 230..1175 | 8..951 | 4665 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:58:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 2491122..2492067 | 8..951 | 4615 | 99.7 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:58:33 has no hits.
UFO02348.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:24:24 Download gff for
UFO02348.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1146-RA | 398..1354 | 1..955 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:12:45 Download gff for
UFO02348.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1146-RB | 342..1298 | 1..955 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:31:34 Download gff for
UFO02348.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1146-RC | 223..1179 | 1..955 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:31:34 Download gff for
UFO02348.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 2491115..2492071 | 1..955 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:12:45 Download gff for
UFO02348.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 2491115..2492071 | 1..955 | 99 | | Plus |
