UFO02349.5prime Sequence
1115 bp (997 high quality bases) assembled on 2008-12-21
> UFO02349.5prime
CAGTCGACATGCCTAACATTGCAGTTATCGGTGCCGGGGTTAATGGTGTT
GCCAGTGCCATTAAGATACTGGAACACTATGTGAACGATGGAAAGACACC
CATAAAGGTGACGATCATATCGGAGGACTTCACGCCTAACACAACTGGAG
ATGGTTCGGCTGGTCTCTGGGGTCCGTACCTTCTGGGCGGCACTTCGCAG
GCGAAAGTCTACAAGTGGTCGAAGAGCATGCACCAATTTTTGGAGAAGAT
CTGGCTGAGCGAGGATGCCGGAGAGGCTGGCGTTTGTCTGCTACCCTGCA
TTCGGCTGAGCACCTCAACGGTGGACACGGTCGAAGATTTTTGGCGTGAC
ATTGTCTATGGAGCAGTGGATCTGTCCAAGGAACAGCTGGCTGCCTACAA
TAAAGGTCGCAGCGTTAAGTTCACGTCTGGTTTATCCTTTGTTACCTACA
CCTCGGAGCCCATTAAGCTACTGCCGTATTTGATGAAGCGTTTCACCCGA
AATGGAGGTGTTGTTGTCCGGAAAAGGATTACAGACCTGGATGCATTTGT
AGCCGATTCCGAGTACGATGTGATAGTCAATTGCTCCGGATTGGGCTCTA
AGACCCTACTAAACGACGATCAAATGTACGCAGTGCGTGGCCAAGTTTCC
CGGGTGAGGGCCAACTGGATTTTCTCTGCCGTGCTGGACGAGAGTGATGA
TGGCAACTATATTATACCCAACACCGAAAGTGTTGTCCTGGCGGAACCCA
TCAGAGCGGGACTACAACACTAAAGTCTGCCAGAACGACAGGCGGATGAT
CGTCGATGGCTGTCAGCGGTACATTCCTGGTTTGGAGCACACGGAGTGCC
TCTTTGATTGGGTAGGTCTCCGGCCGGGTCGCACCCAACTCCGACTGGAA
GCCGAGCGCCGCGGCCGCAGCTCCTCATCCACACTATGGACATGGCGGCA
GTGAGTCACTTTGTGCTGGGGCTGTGCCGACGATGTCCTCATATCCTGTG
TCGCAAGACGGTTCCAATAGCAAGCTTCTAGAACATCGTTTGGCGCGCGG
GTCAAGTAGTGTCATATCATATCTAATCTATCATATTCCAACTAGCCTAG
GGAATCTGGCTAGAA
UFO02349.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:00:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11236-RA | 1181 | CG11236-RA | 42..1060 | 9..1017 | 4840 | 98.9 | Plus |
| CG11236-RB | 1172 | CG11236-RB | 42..1051 | 9..1017 | 4695 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:00:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6803592..6803888 | 425..721 | 1485 | 100 | Plus |
| 2L | 23513712 | 2L | 6803946..6804220 | 722..991 | 1125 | 98.2 | Plus |
| 2L | 23513712 | 2L | 6803310..6803524 | 212..426 | 1075 | 100 | Plus |
| 2L | 23513712 | 2L | 6803052..6803254 | 9..211 | 1015 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:00:52 has no hits.
UFO02349.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:24:09 Download gff for
UFO02349.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11236-RA | 15..1028 | 1..1008 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:50:22 Download gff for
UFO02349.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11236-RA | 37..1050 | 1..1008 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:38:05 Download gff for
UFO02349.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11236-RA | 37..1050 | 1..1008 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:38:05 Download gff for
UFO02349.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6803047..6803254 | 1..211 | 98 | -> | Plus |
| 2L | 6803310..6803522 | 212..424 | 100 | -> | Plus |
| 2L | 6803592..6803888 | 425..721 | 100 | -> | Plus |
| 2L | 6803946..6804231 | 722..1000 | 97 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:50:22 Download gff for
UFO02349.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6803946..6804231 | 722..1000 | 97 | -> | Plus |
| arm_2L | 6803047..6803254 | 1..211 | 98 | -> | Plus |
| arm_2L | 6803310..6803522 | 212..424 | 100 | -> | Plus |
| arm_2L | 6803592..6803888 | 425..721 | 100 | -> | Plus |
