UFO02353.5prime Sequence
1091 bp (1019 high quality bases) assembled on 2008-12-21
> UFO02353.5prime
CAGTCGACATGAAAGCCATCACCGTTTGCCTTTTGGTTCTGGTTTCGGCC
ACCTGTCTGCTGACCACGCGGGCCAATGCAATAGAATTGCTGGAGAACGA
GAACTTCGACTATGATTTCGACTTTGAATCGGAATTGGAGCAGTTGCTGG
ATGAACTGGACAATGACACTGACTACATGGATGTGGAGGCACAGGGCTTT
ATTAGAACATGCCTTAAAATCCTTCGCAAGGCATTGAAAACGGTTCGAGG
CACCAACTGTATTATCAAGGAGGTGACAAACATCCTTAGTTCATGCACCA
GCTATGTGGATGCTATTGATGCCTGTGGCACTGCCATTCCCAAGGATGTG
GCCAAGATTGTGGACTCCGTTAAGGAGATTATCAAAATCTGCGACGATAT
TTTGCATCTGCATTCGAAACTTTGTGCCACGGATAAGTCCGTGGGCTCGT
CCATCAAAAACTCGGCCAAATGCTTCTGGAAATTGTTCAAGGCATCCATG
AGGCTGACCCGAAAGATCAATAAAACCCTAAAACTGATTGCCAAATTGCC
AGCCGATACCAGTTCCTGCTTCGTAAATGCCACCAATAAAGTTACAGCGT
CCTTTAACTCTTTTCTGCCCAACATTGATGTCTGCATCGAGTCTATGGCA
AGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAA
TCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGT
CATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCG
AGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTAT
CAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCGCCCTGCCACT
CATCGCAGTACTGTGTAATCATTAGCATTCTGCCGACATGAAGCATCACA
ACGCATGATGACCTGATCGCAGCGCATCAGCACTGTCGCTTGCGTATAAT
ATTTGCCATGGTGAACGGGGCGAGAGTGTCATATTGGCCACGTTTATCAA
CTGGGACTCCCAGATGCTGAACAAAACATTCCAATACCTTA
UFO02353.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:43:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5107-RA | 681 | CG5107-RA | 27..665 | 9..647 | 3195 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:43:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25505339..25505915 | 71..647 | 2885 | 100 | Plus |
| 3R | 32079331 | 3R | 25505217..25505280 | 9..72 | 320 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:43:46 has no hits.
UFO02353.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:24:06 Download gff for
UFO02353.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5107-RA | 3..646 | 7..651 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:37:13 Download gff for
UFO02353.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5107-RA | 3..646 | 7..651 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:27:07 Download gff for
UFO02353.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5107-RA | 20..668 | 1..651 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:27:07 Download gff for
UFO02353.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25505210..25505279 | 1..71 | 95 | -> | Plus |
| 3R | 25505340..25505918 | 72..651 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:37:13 Download gff for
UFO02353.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21330932..21331001 | 1..71 | 95 | -> | Plus |
| arm_3R | 21331062..21331640 | 72..651 | 99 | == | Plus |
