UFO02354.5prime Sequence
1111 bp (1009 high quality bases) assembled on 2008-12-21
> UFO02354.5prime
CAGTCGACATGAGCAGCTCTACGCCAGCTTACTACAATGCGGATGCTGTG
CGTCAGGTTCTCACCTGGCCGCTGGTCAATAAGGCAGTGGAATCTGCACT
TGTAGCTATAGTTAAGCAGAATCCGGAAACGCCCTCCACATCCTTTGCCT
TTCAACCGAAGAGGACTTTTATTCCATGCGGCAAGGAACCTGGCAAGGTT
CTGCTCACCATGCCCGCCTATGTGGGCAACTACAGGCTGGAATCGTCAAG
GGATCCTGGGGAAGTGGAGCACACCCACTCAACACTGGCCTGCAAGTTGG
TGACCTCGTTCAGTGGGAATCCCCGACGGGATCCTCCGCTGCCCAGCATC
CATGCCCATGTGCTGCTGTTCGACAATCAAACCGGTCAACTGTCGGCCAT
AATGGAGGGCACGGACTTGACCACCTGGCGCACTGTATCCGCTTCACTGG
TGGCCACCAAGTATCTGTACTTCAGGCGCTTTGGGGCGCAGGCGGAGCAG
GAAAGGAATATCAACGTGGCCATCGTGGGCTGTGGAGTTCAAGGACAACT
CCATGCTGCCGCTTTCTGCGCGAACTTCCGGGTGAGGCAGCTTAATCTTT
ACAATCGCACGCAGGCAAAGGCACTGGGTTTAGCGGACCAACTGCGGCAG
AAATTGAACACCGAGAGCGGAACCCAGATTACTGTATGTCCAAGTCCTCA
CGAAGCTTGCCAGGATGCCGATATCATCTGCATCGCCACGTACTCCAAGG
AGCCGCTTATCCAGTTGGCAGATCTGAAATCCAAACGGGCTGTTCATATT
AACGCTGTGGGAGCCGGCGAAGTTCACTTTTCGGAGTGGCTCCAAAGATT
TACCAGCAGCCAAGTCTACGTGGATTGCTATGCCAATGCCGAGGCTGATT
GGTGGGATTACCTGCGCGATCACGCTGAGTGGGTCAGATCATCTGGATGA
AACTATCCAAGGAGCTAGAATCAGCATCTTTCATCATGGGCATGACTCGA
GACGCTGGTGTGGACAGCGTCAGATGCATTATCTCTAGCGCAAGGATTCG
CAGCTTCTAAACATCGTTGGGCCCGCAGTAATGTCATACCTAACTATCTA
TCTATCACTAG
UFO02354.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:17:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4872-RA | 1283 | CG4872-RA | 109..1172 | 9..1049 | 4695 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:17:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 16881455..16882250 | 9..804 | 3980 | 100 | Plus |
| X | 23542271 | X | 16882320..16882510 | 804..983 | 410 | 93.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:17:20 has no hits.
UFO02354.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:24:05 Download gff for
UFO02354.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4872-RA | 86..1092 | 9..1002 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:59:47 Download gff for
UFO02354.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4872-RA | 109..1115 | 9..1002 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:10:16 Download gff for
UFO02354.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4872-RA | 109..1115 | 9..1002 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:10:16 Download gff for
UFO02354.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 16881455..16882250 | 9..804 | 100 | -> | Plus |
| X | 16882321..16882510 | 805..983 | 94 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:59:47 Download gff for
UFO02354.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 16775488..16776283 | 9..804 | 100 | -> | Plus |
| arm_X | 16776354..16776543 | 805..983 | 94 | == | Plus |
