UFO02356.5prime Sequence
1097 bp (953 high quality bases) assembled on 2008-12-21
> UFO02356.5prime
CAGTCGACATGTATTCCGTTCAATTTGAATATTCCGGCTTTTTAAATAGA
CAAAATTCAAAACAAATTAAACTATGGAATGATGTGGATACACCGGTTGC
TGATGGACAAGTGCACCCGCTATGGTCATGTGCTGCGGCATTTGATTCGG
GCTTCCAGGCGAACTGCGACCTCAACGGGACATCACCAGAGTGCTTCGGG
AAAGGATGTGCCAATGGTGCAAATAAGTCCCGCCGATTGACCACCAAGTT
GGCTCTCCTCCGGCTGAAGCTCCTTTGGGACTGGGACTTCTCCGAGCAGA
AGTTCATTGAGAATTCGAGCCAGGCAGCCGCCGTTTTTACGGACTTCGTA
AGGCGCCGCCGCAATCGGAATGTGGAGCGATGCAGTACGCCTATGGGTTT
CAAGCAGATCAAGCACGATCTGTTGGATGATCCGCCCGACTGGAGGCTCA
AAATGATGCGCTTCGAGAAGGAGCACTTCCGGCGGGCCATTCCGCTCAAG
GTGCAGCTGCTGCGGCACTACGACCATCGTTTCGCCTTCCTGGACGTGGT
CTTCGTGGCCCTGCGGAGATCCAATGACTTTCGCTCGCCGGCGGAACTTA
GTGAGATGACGGAGCTGCTAAAGGAGTTCATAGATCCCGCTCAGTTAAGG
GTGCCCCATCCCCTGATCTTCGCCGAGGTGTTCATGCGCTTCCGACGCGA
CTATTCCGTGGAACCCTCGAGAATGGGCAATGTGCAAACAACAGTCGCTG
CATGGGCCAGTGGCTCGTCTCCACGTACAAGTGGTGCGTTTCGACATCCT
CAACCAGCACCCGCTGTTCGATATCCCGAGTTCGAGGAGTGGATGCCTCC
GGTGCTGTCCAGGATGGGTCGCAGCTTTGAAGCAGCTTTCTAGACCATTC
GTTTGGCGCGCGGGCCCAAGTAGTGGTCATATCATATCATAATCATATCA
TATCACACTAGCTAGGAGATCCTGTCATGACTACTGCTGATCTCACAATA
AAAACCGCCGGCGCACGACGTTCTGACATCCGAATGGAGTCTGAGGTCAT
ACTGATCTATCACGGAGTCAAGCGAGCTCGAATCCATACGCCCGCCT
UFO02356.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:16:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30412-RA | 1063 | CG30412-RA | 10..887 | 7..881 | 4300 | 99.5 | Plus |
| CG30412-RC | 1072 | CG30412-RC | 10..896 | 7..881 | 4200 | 98.5 | Plus |
| CG30412-RB | 1160 | CG30412-RB | 332..984 | 232..881 | 3175 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:16:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23318365..23319017 | 881..232 | 3100 | 99.4 | Minus |
| 2R | 25286936 | 2R | 23319114..23319339 | 232..7 | 1130 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:16:53 has no hits.
UFO02356.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:24:01 Download gff for
UFO02356.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30412-RA | 5..890 | 1..885 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:23:32 Download gff for
UFO02356.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30412-RA | 5..890 | 1..885 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:11:41 Download gff for
UFO02356.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30412-RA | 5..890 | 1..885 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:11:41 Download gff for
UFO02356.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23318362..23319016 | 233..885 | 99 | <- | Minus |
| 2R | 23319114..23319342 | 1..232 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:23:32 Download gff for
UFO02356.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19205885..19206539 | 233..885 | 99 | <- | Minus |
| arm_2R | 19206637..19206865 | 1..232 | 98 | | Minus |
