UFO02360.5prime Sequence
1115 bp (1025 high quality bases) assembled on 2008-12-21
> UFO02360.5prime
CAGTCGACATGGAGGCGTCAGCAAGTATAAATTTGCAGCCGGTGGTGAAC
GTTCCTACGATTTATAAGGATCCCTGGTACATGATCACAGTGCTGGTCCT
CTATCTGTACTTCGTCACCAAAGCGGGTCCGCATTTCATGGAATGGCGCA
AACCTTACGAGCTCAAGCGACTTATCTTGCTACATAATTTCATCCAGGTG
GTTTCCTGCATATATGCTATCAAAGAGGTCCTGTACATTACGGACAACAC
CATATACATCTTTTGGAAGTGCCGCGACATCGGGAGCAGCCCAGAGCTCG
TGAGGCGGTACTACAACTTGGCCTACTTTCTCTTCTGGCTGAAGATCTCT
GAGCTGATTGAAACCGTGATCTTTGTGCTTCGCAAGAAACAAAACCAGGT
GTCCAAGCTGCACATCTTTCATCACTTCTCCACGGTAACGCTGGTCTACG
CACTGATCAACTTCAACGAAAATGGTTCTGCTGCTTACTTCTGCGTGTTC
TTGAATTCTATCGTTCACGTTATCATGTACTCGTACTACTTTGTGGCGGC
AGTGGCGGATAAGACCTTGGTGCAGGCCCTAACTCCAGTGAAGAAGTGCA
TCACAGTGATTCAGATGACGCAGTTCGTTCTTATCCTCACGCAGGTTGCT
TTCCAGCTGGTATTGTGCGGCATGCCGCCCTTAGTGCTTCTCTACTTCAC
CACCGTCATTCTTGGCATGTTCTACGGCTTTTACGACTTCTATAATAGTG
CCTATCAAGCCTCGCAGCGGCGCAAGAGTCAGACCCCTCAGTCAGACTCA
AAAAAGGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAG
TGGTCATAATCATAATCATAATCATATCATAATCACAACTAGCCTAGGAG
ATCCTGGTCATGACTAGTGCTTGGATTCTCACAATAAAAACGCCCGGCGG
CAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGTCATTACTGGA
TCTATTCAACAGGAGTCCAAGCGAGCTTGATTTCAAATTACCGCCCCGCC
CTGCCACCTCATTCCCAGTACTGTTTGTTATTCATTAAGCATTCTGGCGG
CAACTGAGCATCAAA
UFO02360.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:40:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30008-RA | 965 | CG30008-RA | 99..900 | 5..806 | 3995 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:40:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9890744..9891076 | 474..806 | 1665 | 100 | Plus |
| 2R | 25286936 | 2R | 9890438..9890688 | 226..476 | 1255 | 100 | Plus |
| 2R | 25286936 | 2R | 9890052..9890160 | 25..133 | 545 | 100 | Plus |
| 2R | 25286936 | 2R | 9890287..9890382 | 134..229 | 480 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:40:09 has no hits.
UFO02360.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:24:11 Download gff for
UFO02360.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30008-RA | 76..889 | 1..817 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:07:00 Download gff for
UFO02360.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30008-RA | 96..909 | 1..817 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:22:00 Download gff for
UFO02360.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30008-RA | 96..909 | 1..817 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:22:00 Download gff for
UFO02360.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9890052..9890160 | 25..133 | 100 | -> | Plus |
| 2R | 9890287..9890380 | 134..227 | 100 | -> | Plus |
| 2R | 9890440..9890686 | 228..474 | 100 | -> | Plus |
| 2R | 9890745..9891085 | 475..817 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:07:00 Download gff for
UFO02360.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5778250..5778590 | 475..817 | 98 | == | Plus |
| arm_2R | 5777557..5777665 | 25..133 | 100 | -> | Plus |
| arm_2R | 5777792..5777885 | 134..227 | 100 | -> | Plus |
| arm_2R | 5777945..5778191 | 228..474 | 100 | -> | Plus |
