UFO02372.5prime Sequence
1114 bp (1004 high quality bases) assembled on 2008-12-21
> UFO02372.5prime
CAGTCGACATGGTGTCGAGTGTAAAAATGATCTTGGCTCTCACCGTCTTG
GCCACCGTAGCCTGCACTGGCTACGCCATCAAGTGCTATCAGTGCGATTC
CTTGACTAATTCCGAGTGTGGAAAGGACATCAAGTCAGACAGTAGCCTCG
TTTTGGATTGCACCAAGATGGCTCCACCTCGATTCCTCCAGAACTTCTTC
CCGGTTCGCAACGCCACCGGTTGCATGAAGCAGACCATCGACATTCCCGG
TAACCCGCAAATCGTGAGGTCCTGCTACTTTGGCAACATCGCCGACACGA
AGGTTGGATGCCAGACCGATCCCAGCCTGACGATCAACAAGTTGCTGAGC
TGCGAGGTTTGCACCGAGGACGAGTGCAACGGAACCTCCTCCCTGGCCCC
CATCGCCGGAGTCATACTCCTGTTCTTTGGCCTGGCCCGTCTGCTAGCCG
CAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCAT
AATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTG
GTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAAC
CGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCT
ATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCC
ACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAG
CCATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCACCTT
GTCGCCTTGCGTATAATATTTGCCCATGGTGAAAACGGGGGCGAAGAAGT
TGTCCATATTGGCCACGTTTAAATCAAAACTGGTGAAACTCACCCAGGGA
TTGGCTGAGACGAAAAACATATCTCAATAAACCCTTTAGGGAAATAGCAG
TTTTCACCGTACACGCCACATCTTGCGAATATATGTGTAGAAACTGCCGA
AATCGTCCTGTTATCCCTCAGAGCGATGAAACGTTTCAGTTTGCCTCATG
GAAACCGGGTACCAGTTAACTATCCCATATCACAGTCACGGCCTTTCATG
CCATACGAATTCGA
UFO02372.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:47:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9338-RB | 1087 | CG9338-RB | 79..519 | 9..449 | 2205 | 100 | Plus |
| CG9338-RA | 689 | CG9338-RA | 79..519 | 9..449 | 2205 | 100 | Plus |
| CG9336-RB | 636 | CG9336-RB | 211..509 | 154..449 | 450 | 77.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:47:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 20866936..20867141 | 244..449 | 1030 | 100 | Plus |
| 2L | 23513712 | 2L | 20865411..20865585 | 69..243 | 875 | 100 | Plus |
| 2L | 23513712 | 2L | 20860693..20860887 | 255..449 | 345 | 78.5 | Plus |
| 2L | 23513712 | 2L | 20865293..20865354 | 9..70 | 310 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:47:58 has no hits.
UFO02372.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:23:55 Download gff for
UFO02372.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9338-RA | 67..511 | 9..453 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:09:34 Download gff for
UFO02372.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9338-RA | 79..523 | 9..453 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:26:21 Download gff for
UFO02372.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9338-RA | 79..523 | 9..453 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:26:21 Download gff for
UFO02372.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 20865293..20865353 | 9..69 | 100 | -> | Plus |
| 2L | 20865412..20865585 | 70..243 | 100 | -> | Plus |
| 2L | 20866936..20867141 | 244..449 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:09:34 Download gff for
UFO02372.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 20865293..20865353 | 9..69 | 100 | -> | Plus |
| arm_2L | 20865412..20865585 | 70..243 | 100 | -> | Plus |
| arm_2L | 20866936..20867141 | 244..449 | 100 | == | Plus |
