UFO02374.5prime Sequence
1112 bp (1011 high quality bases) assembled on 2008-12-21
> UFO02374.5prime
CAGTCGACATGAGGGATCGCGACCGCCGTGACAGAGATCGCGACAGAGAG
AGGGATAGAGATCGGGACCGAGAAAGAGACAGAGAGCGAGACCGCGACAG
ACGACACAGATCAAAGTCGCCCAGCAGGAGCAGCCGGCAGGTTTCAAAAC
CGAAGAAGAAAAAGGCCAAGAAGTCGAAAAAGTACTCGAGAAGGAGTCGC
AGTAGCAGTCGCAGCACCTCGCGCAGCTCCTCCAGCAGCAGGAGTAGTTC
CCGCAGCACGCACAGCAAAAGCAGAACCAGGGATCATCACAAATCGCGGT
CTATTTCGCAGAGGAAAACCAGGGGTCCAAGTTCGGAAAGCAATTCCCGA
TCCGCAACCACACCCGCAGCTGCTCCCGTGAAGGCCATCGATCTGTTCGA
CACCAAGGTGCAAAAGGCACTCGAGACTATAGACGAGGACACCTTCAAGC
CGGAGTCATTTTTTAGCTCCAGGGATTCAAAGGAGACATCCGATAAGGTG
ATCATAGATCTGAACAATGAAACGGTCACAGTCGCCAGCAAGCCAGCCAC
TGCAGTCCGAAACGAAGATGTAATATTCCATCCGAACTTCCTGGGCGACC
CGGATATGAAGGCCGAGAAGTGGCTGCGCAAGCTGTACAATTACCGCCAA
AAGTACATGCAGGAGGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGC
CCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAACT
AGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAA
AACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGA
GGTCATTACTGGATCTATCAACAGAGTCCAAGCGAGCTCGATATCAATTA
CGCCCCGCCCTGCCCCTCATCGCAGTACTGTTGTATTCATTTAGCATCTG
CCGACATGAAGCCATCCACAAACGCATGATGACTGATCGCAGGCGCATCA
GCACCTTGTCGCTGCTTAATATTTGCCCATGTGAAACGGGAGCAAGAGTG
TCAATGCCACGTTAATCAACTGTGACTCACCCAGAATGGCTGAACGAAAC
CATTTCTAATAC
UFO02374.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:23:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11808-RA | 801 | CG11808-RA | 94..750 | 9..665 | 3285 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:23:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 15216300..15216878 | 9..587 | 2895 | 100 | Plus |
| 2R | 25286936 | 2R | 15216942..15217019 | 588..665 | 390 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:23:30 has no hits.
UFO02374.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:23:42 Download gff for
UFO02374.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11808-RA | 92..748 | 9..665 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:30:45 Download gff for
UFO02374.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11808-RA | 94..750 | 9..665 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:08:22 Download gff for
UFO02374.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11808-RA | 94..750 | 9..665 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:08:22 Download gff for
UFO02374.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 15216300..15216878 | 9..587 | 100 | -> | Plus |
| 2R | 15216942..15217019 | 588..665 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:30:45 Download gff for
UFO02374.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 11103805..11104383 | 9..587 | 100 | -> | Plus |
| arm_2R | 11104447..11104524 | 588..665 | 100 | == | Plus |
