UFO02380.5prime Sequence
1116 bp (969 high quality bases) assembled on 2008-12-21
> UFO02380.5prime
CAGTCGACATGGCAAACGAAGAGGTTAAAGACAATGCCCAACTTAAGGCA
ACTATGTTAAACTGCAATTTGAACCCCAGTGTCGCGGATGATTTTGCTGA
GTTCGAGGCAACCCTTGCGAAGATCGATTGTATACTGCAGAACAAGGCAC
CCTGTGACGATGAAGATTCAAAGGCAGGTGGCGATGCCAAGGAGAAGATC
AACTTTGACAACTTGGATGTGGATAAGGTGCGGCTTAAAGTGAAAGAAAA
TCGAACAGTCATCAACAGAAAGTCTCTAGAAGAAGACAATGAGAAGCAAG
TCAAGGATATGAACCAGAAGAGTTTCATGGAGCAGGTGGAGAAGGATGCC
AATGATCGTGCAGAGGCACGTGCCAAAGCCGAATACGAAGCAGAACTACA
GAGAAGTCAGGGAAACGAAGCATTTCGCAGCCAGAAGTACGAGAAGGCAA
TCCTACATTATGACAAGGCTATCATCAAAGTTAAGGACAGCGCTATTACA
TATTGCAATCGCGCCTTGTGCTACATCAAGCTACAGAACTATAAGCGCGC
CCTCAAGGACTGCCAGTACGTGTTGGAGAAGCTGCAGGAGAGTAATCTCC
GCGCCTGGCTCTACCAGGCCCACGCCTACAAGGGTTTGAAACAAGACGAC
AAGTTCGAGGAAAGCGTGGTCAAGGCACGTGAACACAATCCCAAGCAACT
GGCGTACATTTGACAAGTACATTTAAGCAACTGGAAGCCGATCTTAAAGC
ACTAGAAATAGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGT
AAGTGGTCATAATCATTAATCATAATCATAATCATAATCACAACTAGCCT
AGGAGATCCTGGTCATGACTAGTGCTTGGGATTCTCACCAATAAAAACGC
CCGGCGCACCGAGCGTTCTGAACAAATCCAGAATGGAGTTCTGAGGTCAT
TACTGGATCTTATTCAACAGAGTCCAAGCGAAGCCTCGATATCAATTACG
CCCCGCCCCTGCCACCTCATCGCCAGTACTGTTGTTATTCATTTAGCCAT
TCCTTGCCGACATGCAGCCATATCAAACGGCATGTATTGAACCCTGAATT
GGCAGCGCATCAGCAC
UFO02380.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:16:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6980-RA | 927 | CG6980-RA | 66..815 | 9..760 | 3710 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:16:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24807686..24808083 | 9..406 | 1990 | 100 | Plus |
| 3R | 32079331 | 3R | 24808337..24808565 | 530..760 | 1055 | 99.1 | Plus |
| 3R | 32079331 | 3R | 24808140..24808265 | 405..530 | 630 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:16:45 has no hits.
UFO02380.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:23:36 Download gff for
UFO02380.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6980-RA | 76..836 | 9..772 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:23:25 Download gff for
UFO02380.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6980-RA | 66..826 | 9..772 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:11:38 Download gff for
UFO02380.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6980-RA | 66..826 | 9..772 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:11:38 Download gff for
UFO02380.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24807686..24808083 | 9..406 | 100 | -> | Plus |
| 3R | 24808142..24808264 | 407..529 | 100 | -> | Plus |
| 3R | 24808337..24808576 | 530..772 | 97 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:23:25 Download gff for
UFO02380.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20633408..20633805 | 9..406 | 100 | -> | Plus |
| arm_3R | 20633864..20633986 | 407..529 | 100 | -> | Plus |
| arm_3R | 20634059..20634298 | 530..772 | 97 | == | Plus |
