UFO02381.5prime Sequence
1107 bp (986 high quality bases) assembled on 2008-12-21
> UFO02381.5prime
CAGTCGACATGTCCAGAGGCGGTGCTATCGACTTGACCGGCCTATCCGAG
GAGCAGGTGAGCGAGTGGCTCCAAAGTTTCGACACGGTTCTCTGCGACGG
CGACGGCACCATATGGCAGGATGACACGGCCATCGCTGGTGCTCCGGATG
TGGTGAATGCCCTGCAGGATCGATTTGACAAAAAAGTTTACCTGATTACC
AACAATGGCCTAAAGACGCGACAGGAGCTCTTTGAGCGCTCCCAGCGCCT
TGGCTTCCATTTACCCAGCGACCGACACATCATTTCGCCCACGGCGGCCA
TCGCCGACTATCTGGTTGGGAGTCCGAAGTTCGACAGGACCCGGCACAAG
GTCTATGTGGTGGGCAATGCGGCCATTGCGCGGGAATTAAGGCAGCGCGG
AATCGACAGCTACGGAGCCGGCGGAACAGATGAACTGCCTCCGGGCGACA
AATGGCCGGACTTTGTGACACGCGAGTTTGGGAACCCAGAGGCGGCGAAG
GACGTGGGTGCCGTGGTGGTCGGCTGGGATGAGTACTTTAGCTACTGCAA
GATGGCGCGCGCCTGTCACATCCTCTGCAGTAATCCCGACGCCGCCTTTT
TGGTCACCAACCGGGATGCCGTGCACAAGTATCCATCCTTTTGTATCCCC
GGCACTGGGGCCTTTGTGGCCGGAATCGAGGCATGTTCGGAGCGTGAAGC
CCTCGAGATGGGCAAGCCAAATCCATTGGTCCTTGAGCCCTTTATCAGGC
CGAGGGACTACGTACCGAGCGAACGCTTATGATTGGTGACTGCCTCAAAT
AGATGTCGGTTTCGCCAGCAATTGTGGCATGCTATCGCTTCTGGTGGGCA
CGGGTCGTTACAATATCTCTCGGATGTCCGCTGGAAAAAGACAGGCTGCC
CCAGCAGACTTTTATCTGCCCGTCTGGGCGATCTGCTGAACATTTTGCCA
GCTTTCTAGACCATTCGTTTGCGCGCGGGCCCAGGTAGTGGTCATATCCT
TATCATATCATAAATCTTATATCACCACTAGCCTAGGAATCTTGTCTGGA
CTAGTGCTTGGAATTCTCACATAAAACGCCGGCGGCACACCTGACGTTTT
GACATAT
UFO02381.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:43:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5577-RB | 2162 | CG5577-RB | 45..989 | 9..947 | 4575 | 99.4 | Plus |
| CG5577-RA | 1021 | CG5577-RA | 45..989 | 9..947 | 4575 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:43:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 17840036..17840724 | 792..105 | 3395 | 99.9 | Minus |
| 3L | 28110227 | 3L | 17839823..17839977 | 947..797 | 575 | 97.4 | Minus |
| 3L | 28110227 | 3L | 17841286..17841383 | 106..9 | 490 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:43:51 has no hits.
UFO02381.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:23:35 Download gff for
UFO02381.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5577-RA | 15..971 | 1..952 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:52:37 Download gff for
UFO02381.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5577-RA | 38..994 | 1..952 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:16:20 Download gff for
UFO02381.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5577-RA | 38..994 | 1..952 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:16:20 Download gff for
UFO02381.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 17839823..17839982 | 793..947 | 96 | <- | Minus |
| 3L | 17840036..17840723 | 106..792 | 99 | <- | Minus |
| 3L | 17841287..17841389 | 1..105 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:52:37 Download gff for
UFO02381.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 17832923..17833082 | 793..947 | 96 | <- | Minus |
| arm_3L | 17833136..17833823 | 106..792 | 99 | <- | Minus |
| arm_3L | 17834387..17834489 | 1..105 | 96 | | Minus |
