UFO02382.5prime Sequence
1099 bp (985 high quality bases) assembled on 2008-12-21
> UFO02382.5prime
CAGTCGACATGCCAACCAAGGAGCGCCACATAGCCATGATGGGCTACCGA
TCAGTGGGCAAATCGTCGCTATGCATACAGTTCGTGGAGGGCCAGTTCGT
GGACTCCTATGACCCCACCATTGAGAACACCTTCACCAAGATCGAGCGTG
TAAAGTCGCAAGACTACATCGTAAAGCTCATCGACACGGCGGGCCAGGAC
GAGTACAGCATATTCCCGGTGCAGTACAGCATGGATTACCACGGCTACGT
CCTGGTGTACTCGATAACCAGCCAAAAGTCTTTTGAGGTGGTGAAGATCA
TATACGAAAAACTGCTCGACGTAATGGGCAAGAAATATGTACCTGTGGTG
TTGGTCGGCAACAAGATCGATCTCCACCAGGAACGAACCGTTTCCACGGA
GGAAGGCAAGAAGCTGGCCGAGTCCTGGCGAGCTGCATTTCTCGAAACGT
CCGCCAAACAGAACGAGTCCGTGGGAGATATATTCCATCAGCTACTGATC
CTCATCGAAAACGAGAACGGCAATCCCCAGGAGAAGAGCGGTTGTCTTGT
ATCGGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTG
GTCATAATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGA
TCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCG
GCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTG
GATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCC
CTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACAT
GGAAGCCATCACAAACGGCATGATGAACCTGAATCGCAGCGGGCATCAGC
ACTTGTCGCCTGCGTATATATTTGGCCATGGTGAACAGGGGCGAAGAAGT
TGTCAATATGGCACCGTTTAAATCAAACTGGTGAAACCTCACCGAGGATG
CTGAAACGAAACTATTTCTCATAAACCTTAGGGAATAGCAAGTTTCACGT
ACTGCCAATCTTCATTTATGTAGAACTGCGATTCGTCTGATTTCTCAGA
UFO02382.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:36:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rheb-RB | 1059 | CG1081-RB | 137..682 | 9..554 | 2730 | 100 | Plus |
| Rheb-RA | 1225 | CG1081-RA | 303..848 | 9..554 | 2730 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:36:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5569575..5569782 | 130..337 | 1040 | 100 | Plus |
| 3R | 32079331 | 3R | 5569842..5569971 | 338..467 | 650 | 100 | Plus |
| 3R | 32079331 | 3R | 5570026..5570114 | 466..554 | 445 | 100 | Plus |
| 3R | 32079331 | 3R | 5569399..5569471 | 57..129 | 365 | 100 | Plus |
| 3R | 32079331 | 3R | 5569223..5569272 | 9..58 | 250 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:36:52 has no hits.
UFO02382.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:23:45 Download gff for
UFO02382.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rheb-RA | 321..873 | 1..554 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:08:48 Download gff for
UFO02382.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rheb-RA | 296..848 | 1..554 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:08:19 Download gff for
UFO02382.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rheb-RA | 296..848 | 1..554 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:08:19 Download gff for
UFO02382.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5569216..5569271 | 1..57 | 92 | -> | Plus |
| 3R | 5569400..5569471 | 58..129 | 100 | -> | Plus |
| 3R | 5569575..5569782 | 130..337 | 100 | -> | Plus |
| 3R | 5569842..5569971 | 338..467 | 100 | -> | Plus |
| 3R | 5570028..5570114 | 468..554 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:08:48 Download gff for
UFO02382.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1394938..1394993 | 1..57 | 92 | -> | Plus |
| arm_3R | 1395122..1395193 | 58..129 | 100 | -> | Plus |
| arm_3R | 1395297..1395504 | 130..337 | 100 | -> | Plus |
| arm_3R | 1395564..1395693 | 338..467 | 100 | -> | Plus |
| arm_3R | 1395750..1395836 | 468..554 | 100 | == | Plus |
