UFO02384.5prime Sequence
1106 bp (986 high quality bases) assembled on 2008-12-21
> UFO02384.5prime
CAGTCGACATGTCGCACTTGCTGAGGCGCACCAAGAAGTCCTGTCTGAAG
TTCCTGCGCAAGATATCGACTTCAAAGCAGCTCTTTGTCCAGCGGCTGGA
CGAGGAGGACGGGGACGACGAGGAGGTGGAGGAGGAGCTCAACCTGCAGC
GAGATCTGGAGCTGGATGTGAACAGCAACTGTCCGGTGACGGAGGCCATC
TACGAAGAGCTGCAGCTGAGCGAGTGCAACCAGGCCTTGGACTTGGCCAC
CTCCAAGGAGGTGGAGGTGGAGGAACTGCAGCCAGCGGCCAAGCATGACC
TGCGCACCAAATACATGATGAGCTGCGGCAACTACGAGGTGTTGGACACA
CCACTAACGACCATCGAGTTCGAGCGGGTGAAATACAAGGCGAATGTACG
CTACCTGCGGCACACGCCCTCCAATTCCAGTCTGGATCTGCAGCTGGAGG
AACAGAAGGAGGAGCAGCCAGAGCAGCAGCAGCAGCAGCAGGCTACTCCG
CGGAAACAGCAAGTGCTGCAGCAGGCAACTCCTAGGAAACAACAAGTGCA
GCAAAGGATTCCCACGCCCAGCCGCTACCATCCCTGCAGTATCAGCCTGG
GCTCCAAGCTGGAGGGCAACTACCACAGCGTGGTGATCATGGAGCCACCG
CACGACGACTTCCCCATTGTTAAGTGGGACATCAACGGGAACTCCCTGGA
CGACGACGCCTGCGATCGCTGGGATGACTTCGAAGCCAGGTGGCGGCAGG
CGGCGGCGGCCACCAGATCCCTCTCCCAGTCGCAAAAGTCCAGCCACCAG
TCCAGCTCCTGCACCCTGGAGACCTGGGGTGGACGACACGGAGCCCCTCA
GCCTGGAGCTGCAACCGACACGACAATGCAGTAGCGGAACACTGCAATCT
TTGCCTTAGAGCTTCGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGTC
AGGTAGTGGTCATAATCATTATCATAATCATAATCATTATCCACTAGCTA
GGAGAATCCTGGTTCATGACTAGTGCTTGATCTCACCAATAAAAACGGCC
GCGCAACGGAGCGTTCTGAACAAATCGATGGAATTCTGAGGTCATTACTT
GAATCT
UFO02384.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:56:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11191-RB | 1459 | CG11191-RB | 156..1065 | 8..915 | 4410 | 99.3 | Plus |
| CG11191-RA | 1300 | CG11191-RA | 156..1065 | 8..915 | 4410 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:56:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8000891..8001752 | 909..49 | 4090 | 99.3 | Minus |
| 2R | 25286936 | 2R | 8001923..8001965 | 50..8 | 215 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:56:49 has no hits.
UFO02384.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:23:43 Download gff for
UFO02384.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11191-RA | 150..1065 | 1..915 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:12:16 Download gff for
UFO02384.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11191-RA | 150..1065 | 1..915 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:30:40 Download gff for
UFO02384.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11191-RA | 150..1065 | 1..915 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:30:40 Download gff for
UFO02384.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8000891..8001750 | 51..909 | 99 | <- | Minus |
| 2R | 8001923..8001971 | 1..50 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:12:16 Download gff for
UFO02384.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3888396..3889255 | 51..909 | 99 | <- | Minus |
| arm_2R | 3889428..3889476 | 1..50 | 94 | | Minus |
