UFO02385.5prime Sequence
878 bp (768 high quality bases) assembled on 2009-01-13
> UFO02385.5prime
CAGTCGACATGTCGCCGAGAAGGAGCTTGCTGTGCTGCCTGCTGGTGAGC
AGCATCCTAGTGCTGCACCAGGCTCAGGCCAACATCGAGACAAACGATGT
GAATGACCCCAGTTACTACATGCTGCAGGGTGTGCGTGTGTATCCCAATG
ACCGACAGTGCGTCATGGTCGGAGGACTGTGTGTCGCGGAGTCGGACTGC
ATCGAACCCACCTCGAACAAGGGATTGTGTCCCACGAGTGCCGGAGAGGG
CGTGGAGTGCTGCTACGAACTCCGATCAAACCCAACACCTGCTTCGCATC
GCGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGT
CATAATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATC
CTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGC
AACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGA
TCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCT
GCCACTCATCGCAGTACTGTTGTAATTCATTAAAGCATTCTGCCGACATG
GAAGCCATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCA
CCTTGTCGCCTTGCGTATAATATTTGCCAATGGTGAAAACGGGGGCGAAG
AGTTGTCATATTGGCCACGTTAAATCAACCTGGTGAAACTCACCAGGATT
GGCTGAGACGAAAACATATCTCAATAATCCTTTAGGGAATAAGCAGGTTT
TCACCGTACCGCCACATCTGGCAATATTTGGGAGAACTGCCGGAATCGGC
TCTGGTATTCACTTCCGAAAGCATGAAA
UFO02385.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:15:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10433-RB | 1112 | CG10433-RB | 166..459 | 9..302 | 1470 | 100 | Plus |
| CG10433-RC | 1945 | CG10433-RC | 1166..1440 | 9..282 | 1320 | 98.9 | Plus |
| CG10433-RA | 945 | CG10433-RA | 166..440 | 9..282 | 1320 | 98.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:15:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21606468..21606617 | 270..121 | 750 | 100 | Minus |
| 2R | 25286936 | 2R | 21606681..21606792 | 120..9 | 560 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:15:25 has no hits.
UFO02385.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:20:20 Download gff for
UFO02385.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10433-RB | 153..458 | 1..306 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:01:15 Download gff for
UFO02385.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10433-RB | 157..462 | 1..306 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:46:53 Download gff for
UFO02385.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10433-RB | 157..462 | 1..306 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:46:53 Download gff for
UFO02385.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21606468..21606617 | 121..270 | 100 | <- | Minus |
| 2R | 21606681..21606800 | 1..120 | 96 | | Minus |
| 2R | 21606329..21606360 | 271..302 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:01:15 Download gff for
UFO02385.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17493834..17493865 | 271..302 | 100 | <- | Minus |
| arm_2R | 17493973..17494122 | 121..270 | 100 | <- | Minus |
| arm_2R | 17494186..17494305 | 1..120 | 96 | | Minus |
