UFO02386.5prime Sequence
1107 bp (1006 high quality bases) assembled on 2008-12-21
> UFO02386.5prime
CAGTCGACATGGTGGCCTCGGCGCAGCGCGGGGATCGAGAGTGTCACGTT
GTGGTGCTCCTTGAAGACGATATGGTCGAGTGGGATGAAGAGTTTCCGCC
TCAGATGGGCGAGGAGTATTGTCAGACCGTGCACAGCACTGCCATGCACC
GATTCTTCAAGTACATCGAGAACCGCGATGTGGCCAAACAGGTGATGAAG
GATCGCGGTCTGAAGAAGATACGCTGTGGCATAGAGGGATACCCCACCCA
CAAAGAGAAGATCCGAAGGCGTCCCGGTGGACGGGCTGAAGTCATCTACA
GCTATGTGCAGCGACCTTTCATCCACATGTCCTGGGAGAAGGAGGAAGCA
AAGAGTCGCCATGTTGATTTCCAATGTGTAAAATCCAAGTCTGTAACGAA
TCTAGCGGAAGCAAATGCAGATCCGCCACTGGAATTGGACGCAAGTGGAA
ATCCGATTCCCCCTATAGCAGTGGCTAATCCGCATCCCAATAACGCTGAG
CTCGCTGCCGGTATGGCCGTCGCACCCGCAGCTATAGGCGTGGCTGGTCC
AGCAGTCGTGGTAGCCGTCGACGAGGCGGCCGGGGGCGTTGTAATGCTCA
ACGAGTTGGACCAGGCAGCGATCGCTGTTGCCGTCGGAATAGTTGATGAA
AATATGGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAG
TGGTCATAATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGA
GATCCTGGTCATGACTAGTGCTTGGATTCTCACAAATAAAAAACGCCCGG
CGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTAC
TGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCC
GCCCTGCACTCATCGCAGTACTGTTGTAATTCAATTAAGCATTCTGCCGA
CATGGAGCCATCACAAACGGCATGATGAACCTGATCGCCAGCGCCATCAG
CACCTTGTTGGCTTGCGTATAATATTTGCCCATGGTGAAACCGGGCTAGA
GTTGTCATATGACTACGTTAATCAAACTGTCACTCACCTCAAGGATGCTG
AACGAAT
UFO02386.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:39:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mri-RE | 1736 | CG1216-RE | 964..1612 | 8..656 | 3245 | 100 | Plus |
| mri-RA | 1739 | CG1216-RA | 967..1615 | 8..656 | 3245 | 100 | Plus |
| mri-RB | 1647 | CG1216-RB | 875..1523 | 8..656 | 3245 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:39:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 201441..201761 | 127..447 | 1605 | 100 | Plus |
| 3L | 28110227 | 3L | 201817..202028 | 445..656 | 1060 | 100 | Plus |
| 3L | 28110227 | 3L | 201250..201368 | 8..126 | 595 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:39:46 has no hits.
UFO02386.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:23:30 Download gff for
UFO02386.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mri-RC | 130..778 | 8..656 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:35:41 Download gff for
UFO02386.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mri-RB | 875..1523 | 8..656 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:10:43 Download gff for
UFO02386.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mri-RB | 875..1523 | 8..656 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:10:43 Download gff for
UFO02386.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 201250..201368 | 8..126 | 100 | -> | Plus |
| 3L | 201441..201758 | 127..444 | 100 | -> | Plus |
| 3L | 201817..202027 | 445..655 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:35:41 Download gff for
UFO02386.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 201250..201368 | 8..126 | 100 | -> | Plus |
| arm_3L | 201441..201758 | 127..444 | 100 | -> | Plus |
| arm_3L | 201817..202027 | 445..655 | 100 | -> | Plus |
