UFO02390.5prime Sequence
1142 bp (1022 high quality bases) assembled on 2008-12-21
> UFO02390.5prime
CAGTCGACATGGACGTGGATTCTGGTGTTCCAAGATGTTCCATTCGGCTC
CTTTCTACGCTCAGGATCAAGGACAAGCCAAATCAGTTAAATATCTTATC
TAGTTGGAAACACTCACTCGTACACAAACGCTTGCATACTTATAGCTGTA
GAAATATAACCCATACCAATATCAGTAACTACACCCACACCCACAACCAC
AGCCACAGCCACACCGATCGAAGATCAAGTCAGAATTCAAAAGGGAAAAC
CAACAGCAGTAGTATGAATACAAAAAGCAACAGACAGAAGTTTCCTTTGG
CGACAATTTCGAATTGTTTTTCCCATAAGCTCGAACTTGAACTCGAACTC
AAACTACAAGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGT
AAGTGGTCATAATCATAATCATAATCATAATCATAATCACAACTAGCCTA
GGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCC
CGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCAT
TACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCC
CCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCC
GACATGGAAGCCATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCA
TCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCATGGTGAAAACGGGG
GCGAAGAAGTTGTCCATATTGGCCACGTTTAAATCAAAACTGGTGAAACT
CACCCAGGGATTGGCTGAGACGAAAAACATATTCTCAATAAACCCTTTAG
GGAAATAGGCCAGGTTTTCACCGTAACACGCCACATCTTGCGAATATATG
TGTAGAAACTGCCGGAAATCGTCGTGTATTCACTCCAGAGCGATGAAACC
GTTTCAGTTTGCTCATGAAAACGGTGTAACAGGGTGACACTATCCCATAT
CACAGCTCACCGTCTTTCATTGCAATACGAAATCGATGACATCATCAGGC
GGCAAAGATGTAATAAAGCGAATAACTTGCTAATTTCTTTACGGTCTTAA
GCGTAATATCACTACGCTGTAAGGAACTGAGCACTGACTGAA
UFO02390.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:43:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11509-RA | 742 | CG11509-RA | 213..563 | 9..359 | 1755 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:43:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 1652533..1652883 | 9..359 | 1755 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 20:43:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| BS | 5142 | BS BS 5142bp | 1932..1984 | 183..236 | 114 | 70.4 | Plus |
UFO02390.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:52:31 Download gff for
UFO02390.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11509-RA | 209..566 | 1..363 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:16:12 Download gff for
UFO02390.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11509-RA | 209..566 | 1..363 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed on 2014-11-28 21:16:12 has no hits.
Sim4 to na_arms.dmel.RELEASE5 performed on 2013-08-04 23:52:31 has no hits.
