UFO02391.5prime Sequence
1126 bp (1011 high quality bases) assembled on 2008-12-21
> UFO02391.5prime
CAGTCGACATGAATCTCTATTTGTTGTGTGTTTTAATTTTAAGCGGTGGC
AGCCTCTTGTCTACTGCTCAAAGCAATAAATTGGATCTAGTCTATAAGAA
AGCTGAAAGCATGGTTTCCAGTTTAAAGATCAGGCTGGAAGAGCTAAAAC
AGAGCTACAAGGAAATCACAGAAGAAAGAGGCAGTCATGAGACAATTAAC
CCATCCTCCTGTCTAGCTGCCGGAATCAACAGTAATGGCATCCATGTTAT
TGAAGTTCCGGGTCTGGAACCTTTTCCGGTTTATTGTGACACTCGGCTGG
CGGGATCTGGATGGACTGTAATTCAGCGACGACAGGATGGCAGTGAAAAC
TTCTATCGCTGTTGGGAGGAGTATAGCCAAGGATTTGGGGAGCTTAGCGG
AGAATTCTTTATGGGTCTGGAAAAGCTACACTTCCTAACAACCGCGGAGC
CTTACGAGCTGTTTGTCTATATGGAAGATTTCAATGGAGTGGTACATGAT
GCTCGATACGAGGATTTTGCCATTGGGAATGCATCAGCGTCCTATGCGCT
ATCTGTTTTGGGTAAATACTCGGGAGACGCCGGTGATTCGTTAAGGTACC
ACAAGGGAATGCCCTTCTCCACATTCGATCACGATGATACGGGTCACGGA
TGCGCCAGGATTTATGTGGGGGCCTGGTGGTATGATCAGTGCCAGAGGAG
CAACCTCAATGGCCAATATTTGGAAGGAGGTCGATTCGAGCCGAAGATGT
CGGGTCGTGAATCACCTGGATGAGCTGGCGTGGCTACGACTACGGCTACA
AATTCGTACAAATGATGATCAGACCCAAGTGTTCAACAACCTACGAAGGC
AGGGCATGCAAAATGCCTTAAACGCCCATGCAAGCTTTCTAGACCATTCG
TTTGGCGCGCGGGCCCAGGTAGTTGTCATATCAATATCATAATCATAATC
ATATCACAACTAGCCTAGGGAGATCCTGGTCATGACTAGTGCTGATTCTC
ACCAATAAAAACGCCCGCCGGCCACCGGAGCGTCTTGAACAATTCAGATG
GAGTTCTGGAGTCATTACTGATCATCACCGGATCAAGCGAGCTCGAATTC
AAAATTAGCCCCCGCCCTGCCATCTA
UFO02391.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:11:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30281-RA | 1007 | CG30281-RA | 14..887 | 8..879 | 4320 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:11:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 22115325..22115832 | 193..700 | 2540 | 100 | Plus |
| 2R | 25286936 | 2R | 22115887..22116069 | 699..879 | 815 | 98.9 | Plus |
| 2R | 25286936 | 2R | 22115010..22115123 | 8..121 | 570 | 100 | Plus |
| 2R | 25286936 | 2R | 22115171..22115248 | 115..192 | 375 | 98.7 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:11:38 has no hits.
UFO02391.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:23:25 Download gff for
UFO02391.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30281-RA | 8..893 | 1..887 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:19:47 Download gff for
UFO02391.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30281-RA | 8..893 | 1..887 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:52:59 Download gff for
UFO02391.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30281-RA | 8..893 | 1..887 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:52:59 Download gff for
UFO02391.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 22115004..22115123 | 1..121 | 96 | -> | Plus |
| 2R | 22115178..22115248 | 122..192 | 100 | -> | Plus |
| 2R | 22115325..22115832 | 193..700 | 100 | -> | Plus |
| 2R | 22115889..22116075 | 701..887 | 96 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:19:47 Download gff for
UFO02391.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 18002509..18002628 | 1..121 | 96 | -> | Plus |
| arm_2R | 18002683..18002753 | 122..192 | 100 | -> | Plus |
| arm_2R | 18002830..18003337 | 193..700 | 100 | -> | Plus |
| arm_2R | 18003394..18003580 | 701..887 | 96 | == | Plus |
