UFO02395.5prime Sequence
1119 bp (982 high quality bases) assembled on 2008-12-21
> UFO02395.5prime
CAGTCGACATGAAGGACCTGGACGGCTCCTTGGACACTCTGGAGAATGCC
CGCTTCAACTACGTGTATATGAAGGACATTGCTCGCCTGGCAAAGGACTC
GATCTTCTCGCATAACGAGCTGATTAGCATTGTAATGCTCTACCATAAGT
TTGTGCTGGTCAATGGGCCGAGAGCAAAGTACATGACCATTCAGCAACTC
TCTGCGCTGATGGAGCTCTTGTTTGAGATCGTGGATCGCGATCTCATTGC
GACCATTGTGTATAGAATAGCCCATACACCAGGTTCCAGGCCTCCTGACT
TCTTTTCCGACAAGCATATACACTTGGAGTCCTTTGTGCGGCTTTTCACC
GTATACTTCACCAAAGATCTTCAGCTGAAAATGGAATTCGCATTCTCGGT
CTACGATAAAAGCGATTCCAAGCAGTTGAATGGCGAGCAAGTTGGGTTCT
TCGTCGGCAAGTTCTTTGAGAGCGAGGATGAAGACGAATCCATTGAGCTG
CGCTTGGACATGAAGGAGATGCTGTTCCTCAAATTCGACTTGGACAAGGA
TACCAACATTGGGGTTGATGAGTACTACGAGGTGGTCCGCCGACAGCCCA
TGCTGCTGGAGTGCTTTGGTCGCGTGTTTCCCCCGAATCCCCAGATGGAG
GTCCTTGCGCTGTGCGCCAATGTAATGTCTTGGTTTGACGATTCGCCCAA
TCCCAGGATTATGATAAAACCAGACGGCGGCAAGGCCAGCGCAAGCTTTC
TAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAAT
CATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACT
AGTGCTTGGATTCTCACCAATAAAAAAACGCCCGGCGGCAACCGAGCGTT
CTTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCCACA
GGAGTTCAGCGAGCTCGAATCAAATACGCCCCGCCCTGCCACTCATCGCA
GTTCTGTTGTAATTCATTAAGCATTCTGGCCGACATGAGGCCATCCAACC
GGCATGATGACCTGAATCGCAGCGACTCAGTACGTGTCGCCTGCTATAAA
ATTTGCCATGGGAAACGGG
UFO02395.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:36:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3565-RA | 899 | CG3565-RA | 46..782 | 4..740 | 3670 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:36:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24602517..24602913 | 4..400 | 1970 | 99.7 | Plus |
| 2R | 25286936 | 2R | 24603137..24603371 | 506..740 | 1175 | 100 | Plus |
| 2R | 25286936 | 2R | 24602968..24603077 | 398..507 | 550 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:36:33 has no hits.
UFO02395.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:23:32 Download gff for
UFO02395.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3565-RA | 43..787 | 1..747 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:08:36 Download gff for
UFO02395.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3565-RA | 43..787 | 1..747 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:08:02 Download gff for
UFO02395.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3565-RA | 43..787 | 1..747 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:08:02 Download gff for
UFO02395.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24602514..24602911 | 1..398 | 99 | -> | Plus |
| 2R | 24602969..24603076 | 399..506 | 100 | -> | Plus |
| 2R | 24603138..24603376 | 507..747 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:08:36 Download gff for
UFO02395.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20490661..20490899 | 507..747 | 98 | == | Plus |
| arm_2R | 20490037..20490434 | 1..398 | 99 | -> | Plus |
| arm_2R | 20490492..20490599 | 399..506 | 100 | -> | Plus |
