UFO02401.5prime Sequence
980 bp (833 high quality bases) assembled on 2009-01-13
> UFO02401.5prime
CAGTCGACATGGGCACGCCTCGTCTGACCGTAGTACACGGTCTAATCCTT
CTGCTCCTTGTGGAGCTAGGTTTGACTGCGGTCAGCGATACGGAGTGGGA
CCAGTACAAGGCTAAGTACAACAAGCAGTACAGGAACAGGGACAAATACC
ACCGGGCGCTATACGAACAGAGGGTCCTGGCGGTGGAAAGCCACAACCAG
CTCTATTTGCAGGGAAAGGTTGCATTCAAGATGGGACTAAACAAGTTCTC
CGACACAGATCAGAGAATCCTCTTCAATTATCGCTCGTCGATCCCAGCGC
CGCTGGAGACGAGTACCAATGCACTTACGGAGACTGTAAACTACAAGAGG
TACGACCAGATCACCGAAGGAATCGACTGGCGGCAGTACGGCTATATATC
GCCAGTGGGAGACCAGGGCACCGAGTGCCTGAGCTGCTGGGCCTTCTCCA
CCTCGGGTGTTCTTGAGGCACATATGGCGAAGAAGTATGGAAATCTGGTT
CCCCTTTCACCCAAGCACTTGGTGGACTGTGTTCCCTATCCGAATAACGG
CTGCAGCGGTGGTTGGGTGAGCGTGGCCTTTAACTACACCAGGGACCATG
GCATCGCCACAAAGGAATCCTATCCGTACGAGCCTGTATCACGAGAATGC
CTGTGGAAAAGCGACAGAAGTGCAGCACATTGTCGGGCTACGTCACTCTC
GGCAACTACGATGAACGGGAACTGGCGGAGTGTCTACAACATTGGACCCG
TGCGGTGTCCATTGACCATCTCCACGAGGAATTCGATCAGTACTCCGGTG
GAGTCCTCAGTATTCCGGCGTGCAGATCTAAGAAGACAGGACTTTACCCA
CTCCGTTCTTTTTAGTCCGCTTTGGAACCCATCGGAAGTGGGGGAAACTA
CTGGATAAATAAAGACTCTTATGACGATTGGGAAAAGTGCTACTAAAGCT
AGCTCGACGCCACACCACTGGGTGGGAGTG
UFO02401.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:15:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11459-RB | 1413 | CG11459-RB | 37..992 | 9..956 | 4320 | 97.7 | Plus |
| CG11459-RA | 1123 | CG11459-RA | 37..992 | 9..956 | 4320 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:15:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 6026302..6027202 | 908..9 | 4115 | 98.6 | Minus |
| 3R | 32079331 | 3R | 6028003..6028416 | 391..801 | 765 | 81.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:15:49 has no hits.
UFO02401.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:20:18 Download gff for
UFO02401.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11459-RA | 30..1007 | 1..968 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:15:55 Download gff for
UFO02401.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11459-RA | 28..1005 | 1..968 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:04:57 Download gff for
UFO02401.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11459-RA | 28..1005 | 1..968 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:04:57 Download gff for
UFO02401.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 6026234..6027211 | 1..968 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:15:55 Download gff for
UFO02401.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1851956..1852933 | 1..968 | 97 | | Minus |
