UFO02404.5prime Sequence
998 bp (894 high quality bases) assembled on 2009-01-13
> UFO02404.5prime
CAGTCGACATGAAGCTGACCCTCACCATTGGACTAATCCTTGTGGCCGCC
GGAGTTCTGGAGGCCCAGCCGCAGGGCAGGATCGCCGGTGGAGAAGATGC
CGTTCTCGGCCAGCTGCCCTACCAGGCGGCCCTCTCCATCGGCGGAAGCT
ACAACTGCGGCGCCGTGATCATTGGCCAGCGATACGCCCTCACCGCCCTC
TCTTGCGTCTGCTCCGACGGCAAGGATACCCCATGGGCTGCTGTTCTGTT
CGCCGTGACCGTAGGATCGGTGGATCTCTACAATGGCAAGCAGATTCGCG
TGGAGGAGATCACCATTAACCCGAACTACAGCACTCTGAAGACCGGAATC
GCCCTGCTCCGTCTGCAGGAGGAGATTACTTTCAGTGAGACAGTCAATGC
CATTCCACTCTCCCAGGACGTTCCGCCCATGGGCAGCCAGGTGGAGGTCT
CCGGCTGGGGCCGCACCACCGAGTCCGAGGTGAACATGCATCGCACCCTG
CAAATAGGAGCCGCCGAGGTGATGGCACCACGCGAATGCGCCCTGGCCAA
TCGGGATGAGCTGCTGGTGGCGGACGACCAGGTGCTGTGCCTGGGCCATG
GCCGTCGTCAGGGAATCTGCAGTGGGGACATTGGAGGACCGGCCGTCTAC
CAGGGCCAGCTGGTGGGTCTGGGTGCACAGATCCTTGGCGAGTGCGGCGG
AATGCTGCCCGAACGATTCATTAGCATTGCGGCCAACTACGATTGGATCC
AACAGCAGTTGCAGCAAGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGG
GCCCAGGTAGTGGTCATAATCATATCATATCATATCATATCACACTAGCC
TAGAGATCCTGTTCATGACTAGTGCTGATTCTCACCAATAAAAAACCGCC
GGCGGCAACGAGCGTTCTGAACAATCCGATGGAGTTCTGAGTCATACTGG
ATCTATCAACGAGTCCAGCGAGCTCGATTCAATACGCCCGCCTGCACC
UFO02404.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:53:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9672-RA | 813 | CG9672-RA | 30..789 | 8..767 | 3800 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:53:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 16705995..16706529 | 767..233 | 2675 | 100 | Minus |
| X | 23542271 | X | 16706621..16706845 | 232..8 | 1125 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:53:10 has no hits.
UFO02404.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:20:17 Download gff for
UFO02404.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9672-RA | 20..788 | 1..771 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:44:14 Download gff for
UFO02404.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9672-RA | 24..792 | 1..771 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:32:49 Download gff for
UFO02404.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9672-RA | 24..792 | 1..771 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:32:49 Download gff for
UFO02404.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 16705991..16706529 | 233..771 | 99 | <- | Minus |
| X | 16706621..16706850 | 1..232 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:44:14 Download gff for
UFO02404.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 16600024..16600562 | 233..771 | 99 | <- | Minus |
| arm_X | 16600654..16600883 | 1..232 | 98 | | Minus |
