Clone UFO02405 Report

Search the DGRC for UFO02405

Clone and Library Details

Library:UFO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2008-06-20
Comments:BD Creator expression clones with C-terminus FLAG HA tag for transgenic expression using PhiC31 integrase system
Original Plate Number:24
Well:5
Vector:pUAST-CFLAGHA-BD-PHI
Associated Gene/TranscriptFibp-RB
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

UFO02405.5prime Sequence

1095 bp (975 high quality bases) assembled on 2009-01-13

> UFO02405.5prime
CAGTCGACATGGGCGCTCCCAGCGACCTGATTGCATCGGATGTACTGGAT
CATTACCGCACCTATTCCCTGATTGAACTATACCTAAACGCACCCACCAA
ACTGATGGAGCAATCCTGCTTCCAGCTGGAGCCACAAATGCGTGACCTTA
TCACCGAGAAGTACTATTCCATCGATGATGTGGTGGCTCGCGAAATTCTT
GGCAAGAAGCTGTCGTCCCGCTACCGCAAGGACCTCGACGAGGTGGCCGA
GAAGACGTGCGTCAAGCTAAAATCAGTTCGCCGACAATTTGACAACGTAA
AACGCATTTTTAAGGCAGTCGAGGAAATGCCGGGCACGTTAACCAACAAC
ATCAAGCAACACTTCATCATATCCACCGATCTAGCCAAAAAGTACGCCTG
CATTGTTTTCCTGGCCTGCCTGCGTTTCGAAACCACCAAAAAAAAGTTGC
AATACCTGAGCTTCAGTGATTTGTTGACCTGCTCCCATGCCATCATGATC
TACTGGACGTATACTTACCAGCACACTGGACCGGAGTACTATGATACCGA
AATGGACAAAGAGTTTCTCTTGGACCTGCGGGAGTTGCGCTGTCTACTCG
ACAAGGAAAAGGAGATTAAGCACCTCGTCTGCATGCGCCTCAAACCCGTT
CTTCTCGAGCGCGCCTTTCACGAACTGGATGGCAACTTTCGTTCTTACTG
GCGCGCCCTGATCACCATCGCCTGCAATTTGCATCGCAATCGGGAGCTGC
GCGATCTTTTCGTCGATCTCTGTGAGAAGCTTATTGATCCTTGGCGTCAG
AATGGCTGGAACCGTGAGCAAGTGAATAAATTTTTGGCTTCCATAACGCA
AGCGTTTTGGATCTGGGAAATATCAAGGGACCAAGAAACCAGATGTCTTT
GGGATCGCTATATGCAGTCATACGATATGCTTGGATAAAATGTATCACAT
TGCAGCTTTCTAGACATTCGGTTGGCCGCGCGGGCCCAGGTAAGTGGTCA
TAATCATAATCATAATCATATCTATCCAACTAGGCTAGGGAGATCTTGTC
ATGACTGGTGCTGGATTCCCACCAATAAAAACGCCCGCGCGGCAC

UFO02405.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:48:15
Subject Length Description Subject Range Query Range Score Percent Strand
Fibp-RF 1233 CG8660-RF 167..1112 8..951 4635 99.6 Plus
Fibp-RE 1330 CG8660-RE 344..1289 8..951 4635 99.6 Plus
Fibp-RC 1274 CG8660-RC 288..1233 8..951 4635 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:48:13
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19817231..19817503 280..8 1365 100 Minus
3L 28110227 3L 19816345..19816532 878..691 845 98.9 Minus
3L 28110227 3L 19816871..19817003 521..389 665 100 Minus
3L 28110227 3L 19817060..19817168 388..280 545 100 Minus
3L 28110227 3L 19816720..19816823 622..519 520 100 Minus
3L 28110227 3L 19816593..19816661 691..623 345 100 Minus
3L 28110227 3L 19816206..19816283 951..876 290 97.4 Minus
Blast to na_te.dros performed on 2014-11-28 21:48:14 has no hits.

UFO02405.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:20:16 Download gff for UFO02405.5prime
Subject Subject Range Query Range Percent Splice Strand
Fibp-RC 460..1414 1..955 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:40:24 Download gff for UFO02405.5prime
Subject Subject Range Query Range Percent Splice Strand
Fibp-RC 283..1237 1..955 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:41:18 Download gff for UFO02405.5prime
Subject Subject Range Query Range Percent Splice Strand
Fibp-RC 283..1237 1..955 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:41:18 Download gff for UFO02405.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 19816593..19816661 623..691 100 <- Minus
3L 19816720..19816820 522..622 100 <- Minus
3L 19816871..19817003 389..521 100 <- Minus
3L 19817060..19817167 281..388 100 <- Minus
3L 19817231..19817508 1..280 98   Minus
3L 19816202..19816281 878..955 95 <- Minus
3L 19816346..19816531 692..877 98 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:40:24 Download gff for UFO02405.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19809820..19809920 522..622 100 <- Minus
arm_3L 19809971..19810103 389..521 100 <- Minus
arm_3L 19810160..19810267 281..388 100 <- Minus
arm_3L 19810331..19810608 1..280 98   Minus
arm_3L 19809302..19809381 878..955 95 <- Minus
arm_3L 19809446..19809631 692..877 98 <- Minus
arm_3L 19809693..19809761 623..691 100 <- Minus