UFO02405.5prime Sequence
1095 bp (975 high quality bases) assembled on 2009-01-13
> UFO02405.5prime
CAGTCGACATGGGCGCTCCCAGCGACCTGATTGCATCGGATGTACTGGAT
CATTACCGCACCTATTCCCTGATTGAACTATACCTAAACGCACCCACCAA
ACTGATGGAGCAATCCTGCTTCCAGCTGGAGCCACAAATGCGTGACCTTA
TCACCGAGAAGTACTATTCCATCGATGATGTGGTGGCTCGCGAAATTCTT
GGCAAGAAGCTGTCGTCCCGCTACCGCAAGGACCTCGACGAGGTGGCCGA
GAAGACGTGCGTCAAGCTAAAATCAGTTCGCCGACAATTTGACAACGTAA
AACGCATTTTTAAGGCAGTCGAGGAAATGCCGGGCACGTTAACCAACAAC
ATCAAGCAACACTTCATCATATCCACCGATCTAGCCAAAAAGTACGCCTG
CATTGTTTTCCTGGCCTGCCTGCGTTTCGAAACCACCAAAAAAAAGTTGC
AATACCTGAGCTTCAGTGATTTGTTGACCTGCTCCCATGCCATCATGATC
TACTGGACGTATACTTACCAGCACACTGGACCGGAGTACTATGATACCGA
AATGGACAAAGAGTTTCTCTTGGACCTGCGGGAGTTGCGCTGTCTACTCG
ACAAGGAAAAGGAGATTAAGCACCTCGTCTGCATGCGCCTCAAACCCGTT
CTTCTCGAGCGCGCCTTTCACGAACTGGATGGCAACTTTCGTTCTTACTG
GCGCGCCCTGATCACCATCGCCTGCAATTTGCATCGCAATCGGGAGCTGC
GCGATCTTTTCGTCGATCTCTGTGAGAAGCTTATTGATCCTTGGCGTCAG
AATGGCTGGAACCGTGAGCAAGTGAATAAATTTTTGGCTTCCATAACGCA
AGCGTTTTGGATCTGGGAAATATCAAGGGACCAAGAAACCAGATGTCTTT
GGGATCGCTATATGCAGTCATACGATATGCTTGGATAAAATGTATCACAT
TGCAGCTTTCTAGACATTCGGTTGGCCGCGCGGGCCCAGGTAAGTGGTCA
TAATCATAATCATAATCATATCTATCCAACTAGGCTAGGGAGATCTTGTC
ATGACTGGTGCTGGATTCCCACCAATAAAAACGCCCGCGCGGCAC
UFO02405.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:48:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Fibp-RF | 1233 | CG8660-RF | 167..1112 | 8..951 | 4635 | 99.6 | Plus |
Fibp-RE | 1330 | CG8660-RE | 344..1289 | 8..951 | 4635 | 99.6 | Plus |
Fibp-RC | 1274 | CG8660-RC | 288..1233 | 8..951 | 4635 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:48:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 19817231..19817503 | 280..8 | 1365 | 100 | Minus |
3L | 28110227 | 3L | 19816345..19816532 | 878..691 | 845 | 98.9 | Minus |
3L | 28110227 | 3L | 19816871..19817003 | 521..389 | 665 | 100 | Minus |
3L | 28110227 | 3L | 19817060..19817168 | 388..280 | 545 | 100 | Minus |
3L | 28110227 | 3L | 19816720..19816823 | 622..519 | 520 | 100 | Minus |
3L | 28110227 | 3L | 19816593..19816661 | 691..623 | 345 | 100 | Minus |
3L | 28110227 | 3L | 19816206..19816283 | 951..876 | 290 | 97.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:48:14 has no hits.
UFO02405.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:20:16 Download gff for
UFO02405.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fibp-RC | 460..1414 | 1..955 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:40:24 Download gff for
UFO02405.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fibp-RC | 283..1237 | 1..955 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:41:18 Download gff for
UFO02405.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fibp-RC | 283..1237 | 1..955 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:41:18 Download gff for
UFO02405.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 19816593..19816661 | 623..691 | 100 | <- | Minus |
3L | 19816720..19816820 | 522..622 | 100 | <- | Minus |
3L | 19816871..19817003 | 389..521 | 100 | <- | Minus |
3L | 19817060..19817167 | 281..388 | 100 | <- | Minus |
3L | 19817231..19817508 | 1..280 | 98 | | Minus |
3L | 19816202..19816281 | 878..955 | 95 | <- | Minus |
3L | 19816346..19816531 | 692..877 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:40:24 Download gff for
UFO02405.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 19809820..19809920 | 522..622 | 100 | <- | Minus |
arm_3L | 19809971..19810103 | 389..521 | 100 | <- | Minus |
arm_3L | 19810160..19810267 | 281..388 | 100 | <- | Minus |
arm_3L | 19810331..19810608 | 1..280 | 98 | | Minus |
arm_3L | 19809302..19809381 | 878..955 | 95 | <- | Minus |
arm_3L | 19809446..19809631 | 692..877 | 98 | <- | Minus |
arm_3L | 19809693..19809761 | 623..691 | 100 | <- | Minus |