UFO02408.5prime Sequence
1047 bp (932 high quality bases) assembled on 2009-01-13
> UFO02408.5prime
CAGTCGACATGGAAAAACTGGAGGCCCTAAAAATATCCTCGATGCGTCCG
CGCAGCAACATCCTAGACAGACCACTATCCAAGGGCAAAACGGAGGTTTC
CCAGAGCATTGTGGCGCTGCTTTTCAGCGAAATCGTCCAGTACTCGCAGA
GCCGAGTGTTTACAGTCCCAGAATTGCAAACAAGACTCCACGATCTGGGT
CAAGATGTAGGCACCCGCATAATCGACCTGTATTTCGTGAGGGAGCGCAG
CTCCAAGCGAGAAACAAAACTAACCCAAATGCTTCTCTTTGTTAAGACCA
CGGTGTGGAAGAATCTCTTTGGCAAAGAGGCGGAGAAACTGGAACATGCC
AACGACGACGAAAGGACATACTACATAATTGAAAAGGAACCGCTTGTCAA
CACATTCATAAGCGTGCCAAAGGATAAGGGCTCGCTGAATTGCGCTAATT
TCACCGCTGGCATCGTGGAAGCTGTGCTCACGAACTGCGGATTTCCGTGC
AAGGTCACCGCCCACTGGCACAAGGGCACCACGTACATGGTCAAATTTGA
GGACTTTGTCATCGCCCGCGACAAGCAGATGGAGGAGAAAGCAAGCTTTC
TAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAAT
CATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACT
AGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTC
TGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGA
GTCCAAGCGAGCTCGATATCAAATTACGCCCCCGCCCTGCCCCTCATCGC
AGTACTGTGTAATTCATAGCATCTGCCGACATGCAGCCATCACAAACGCA
TGATGAACCTGATCCGCCAGCGCATCAGCACCTTGTCGCCTGCGTTTATA
TTTGCCATGTGAACGGGGCCGAGAAGTTGTCCATATTGCCACGTTTAATC
AACTGGTGACTCACCAGATTGCTGAAACGAAAAACAATTCCATTACC
UFO02408.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:23:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Trs31-RA | 666 | CG10153-RA | 66..647 | 9..590 | 2910 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:23:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 14757241..14757552 | 494..183 | 1560 | 100 | Minus |
| 2R | 25286936 | 2R | 14757606..14757781 | 184..9 | 880 | 100 | Minus |
| 2R | 25286936 | 2R | 14757083..14757178 | 590..495 | 480 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:23:03 has no hits.
UFO02408.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:20:15 Download gff for
UFO02408.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10153-RA | 42..633 | 1..594 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:26:50 Download gff for
UFO02408.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10153-RA | 59..650 | 1..594 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:14:34 Download gff for
UFO02408.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Trs31-RA | 59..650 | 1..594 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:14:34 Download gff for
UFO02408.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 14757079..14757178 | 495..594 | 98 | <- | Minus |
| 2R | 14757241..14757550 | 185..494 | 100 | <- | Minus |
| 2R | 14757606..14757788 | 1..184 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:26:50 Download gff for
UFO02408.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 10644584..10644683 | 495..594 | 98 | <- | Minus |
| arm_2R | 10644746..10645055 | 185..494 | 100 | <- | Minus |
| arm_2R | 10645111..10645293 | 1..184 | 97 | | Minus |
