UFO02409.5prime Sequence
936 bp (814 high quality bases) assembled on 2009-01-13
> UFO02409.5prime
CAGTCGACATGGAGAAGGTTTGTCAGTTTTTCCGCAACAACTACGTGCTG
GCCAATTGCGAGGATGCCATATACAAAAAGGCATTCTCCCTGAATCTGTC
CCACTACCAAATCTCCGACGTTCCGGGCATCATAGAGAAGTGCGAGACGC
TGATGAAGCTGTTCCTCAACCAAAACAAGCTAACAAAGATTCCATCCTCC
ATTGGTAGTTTGATGCGACTTCAGGTCCTCACGTTGGACTACAATAAACT
GGACGAATTCCCGCTCTGCATCTGTCGTTTGGTCCGGCTGAAGTTTCTCA
ACATCAGCTGCAATAACATTAGTAGTTTGCCACCCGAACTGGGATACCTC
ACTCAGCTGGAGACGTTCTGGTGCAATAATACTGGGCTCCTGGAGCTGCC
CAACGAAATTCGTAACTGTGAACACCTCGAGACGCTGGGCGTACGGGGAA
ATCCCTTGAAGAAGTTGCCCGATGCCATAGGCGCTCTGTCCTCCCTGCGT
TGGCTAACAGCCGAGGGCTGCGAACTCAGCGAAGTGCCACTGACCATGGC
GTTGCTGGGAAATTTGGTGCATCTGAATCTTAAGGGGAATCGATTGCGAC
GGCTGCCCAGGATGCTGATGGCCATGCAGAAGCTGCGGTTTGCTTTTCTC
AACGAAAATTGTATTGACGAGATGCCCACGCGGTCACAACTGGAGGAGTT
GCGGACTCTTCACATGCTCAACCTGTCCAGATCCCATCAGCCTGCACGCG
ATCTACAGCTAATGGCTTTGCGCAGACGAACCTTTATGTGAGCTGCCGTC
AGATCCGCAATATTTGCGATGGTCTCCCCAGTCGAGCTAGCCTCAACGCC
CAGGAAAAGCAGGAGATCAGGGCGAAGAGCAGACAGATCTTGACTCTCTC
CGACTGGCGAACGCGTGCGGACAGGACTGACCACGG
UFO02409.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:51:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10307-RB | 1177 | CG10307-RB | 82..1011 | 5..922 | 4245 | 98.1 | Plus |
| CG10307-RA | 1362 | CG10307-RA | 267..1196 | 5..922 | 4245 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:51:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21689282..21689868 | 187..770 | 2805 | 99.3 | Plus |
| 2R | 25286936 | 2R | 21689039..21689222 | 5..188 | 920 | 100 | Plus |
| 2R | 25286936 | 2R | 21689930..21690025 | 773..865 | 320 | 93.8 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:51:31 has no hits.
UFO02409.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:20:14 Download gff for
UFO02409.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10307-RA | 123..1024 | 1..890 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:42:27 Download gff for
UFO02409.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10307-RA | 123..1024 | 1..890 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:43:01 Download gff for
UFO02409.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10307-RA | 262..1163 | 1..890 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:43:01 Download gff for
UFO02409.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21689034..21689222 | 1..188 | 98 | -> | Plus |
| 2R | 21689284..21689868 | 189..770 | 99 | -> | Plus |
| 2R | 21689927..21690054 | 771..890 | 91 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:42:27 Download gff for
UFO02409.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17576539..17576727 | 1..188 | 98 | -> | Plus |
| arm_2R | 17576789..17577373 | 189..770 | 99 | -> | Plus |
| arm_2R | 17577432..17577559 | 771..890 | 91 | | Plus |
