UFO02412.5prime Sequence
783 bp (676 high quality bases) assembled on 2009-01-13
> UFO02412.5prime
CAGTCGACATGTCGGGATCACTGCCAGCTACTTTCGTCAAGGGTTTCCAC
GATGAGGAGAAGGTGCGTCGTATGGAGTACCGCCAACTCGGATCCACGGG
TCTGCGAGTATCCAAAATTGCTTTGGGTGGTGCCACTCTCTCCAAGCTCT
TCTCCGATGACTTCGATCGCGAGGAGGGCATCCTCACGGTGCAGGAAGCC
ATTAGATCCGGTATCAACTACATAGACACGGCTCCCTTTTATGGCCAAGG
CAAATCGGAAGAGCTGCTTGGCCAGGCGCTCAAGGATGTGCCCCGGGAGG
CCTATTATATAGCAACTAAAGTTGCACGTTACGAGTTGGATCCAAACAAT
ATGTTCGACTATACGGCTGCCAAGGCTCGGGAGAGTGTGAAGCGTAGTCT
GGAGCTGCTCCAGTTGGACAGGGTGGACGTACTACAGGTTCATGACGTGG
ATGCGGCACCTAGTCTGGACATGGTGCTGAATGAGACCATACCCGTCCTC
GAGGAGTACGTCCAGGCGGGAAAGGCTCGATTCATCGGAGTCACCGCCTA
CGATGTGGACGTGCTGAAGAGTGTGCCGAGCGGGCAAAGGTCGCATCCAG
GTGTGCTCAACTATGCCCGCTACACCCTGTGGACAACACTTTGCTGCGCC
ACATGAAGCTCAGGAGATGGGCGTTGGCGTTGTCTGTGCGCCGCGCACTC
TCTGGACTCCTAAGCACGCTGACCAGTCTGCATCTGTAGTCGACTCCTAG
CTGGGGCACGGAGCGATCTGTCAAAGACGTGGC
UFO02412.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:23:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3397-RA | 1187 | CG3397-RA | 34..757 | 9..721 | 3350 | 98.3 | Plus |
| CG12224-RC | 1628 | CG12224-RC | 523..1210 | 9..700 | 2075 | 87.2 | Plus |
| CG12224-RB | 1109 | CG12224-RB | 4..691 | 9..700 | 2075 | 87.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:23:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11984078..11984508 | 439..9 | 2155 | 100 | Minus |
| 3R | 32079331 | 3R | 11981604..11982021 | 439..9 | 1175 | 85.4 | Minus |
| 3R | 32079331 | 3R | 11983736..11984028 | 716..434 | 1025 | 95.6 | Minus |
| 3R | 32079331 | 3R | 11981326..11981554 | 658..434 | 750 | 92.6 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:23:07 has no hits.
UFO02412.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:20:19 Download gff for
UFO02412.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3397-RA | 31..767 | 2..728 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:26:51 Download gff for
UFO02412.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3397-RA | 31..767 | 2..728 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:14:36 Download gff for
UFO02412.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3397-RA | 31..767 | 2..728 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:14:36 Download gff for
UFO02412.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11983727..11984024 | 438..723 | 95 | <- | Minus |
| 3R | 11984080..11984511 | 2..437 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:26:51 Download gff for
UFO02412.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7809449..7809746 | 438..723 | 95 | <- | Minus |
| arm_3R | 7809802..7810233 | 2..437 | 99 | | Minus |
