UFO02414.5prime Sequence
857 bp (722 high quality bases) assembled on 2009-01-13
> UFO02414.5prime
CAGTCGACATGTTCCACTTCAGCGGCTTCAACATGATGTTCCCGGAGGGA
CGCAATTTTCATGCCAACTACAAGTGCTTCTCCGTATCCATGTTGCCAGG
AAACGAGCGAACCGACGTGGAAAAGGGCGGAAAGATTATTATGCCTCCCT
CGGCGCTGGACACGCTCACCCGCCTGAATGTCGAGTATCCAATGCTGTTC
AAGCTGACCAACGTCAAGAAATCGCGATCCTCGCATGCCGGCGTACTCGA
GTTTGTGGCCGACGAGGGCAAATGCTATCTACCCCACTGGATGATGGAAA
ACCTGCTGTTGGGTGAGGGCGACATACTCAACATCGAGAGTGTCTCGCTG
CCGGTGGCCACCTTCTCAAAGTTTCAACCGCACAGCACCGACTTCCTGGA
CATCACCAATCCCAAGGCGGTGCTGGAGAATGCATTGCGCAACTTTGCCT
GCCTCACCAGGGGCGATGTCATAGCCATTAAGTACAACAAGAAGGTCTAC
GAACTGTGTGTCCTGAGACAAAGCCCGGCAATGCAGTCAGCATCATTGAG
TGCGACATGAATGTGGAATTTGAGGCGCCAGTCGGCTACAAGGATCACTC
CGAAACGCAGGCATCGGGCTCTGGGCAGCAGGTGCTGCTGGAACTTTTGG
CGGCGAAATCGCTGGAGCCACCACGCCATACTCGAAGAGGTCGTGGAAGA
CCTTCAGGGTTCCGGCGTACGTCCTCGATGGTAGAGAAGAGAAAGCAGTT
GGAACGCCGTCGTTAGAAGTGGTTAGCCCCGGGCGTTCAGACTATGATTT
CAAGTTTGGACTCATCGGTTCGATCGCACATTCGGCCTATCATGATAAGA
GCCAAGA
UFO02414.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:31:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ufd1-like-RA | 1194 | CG6233-RA | 169..1031 | 9..857 | 3735 | 96.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:31:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 11122145..11122864 | 842..136 | 2710 | 95.3 | Minus |
| 3L | 28110227 | 3L | 11122922..11123048 | 135..9 | 635 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:31:44 has no hits.
UFO02414.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:20:11 Download gff for
UFO02414.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ufd1-like-RA | 148..1015 | 1..856 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:48:26 Download gff for
UFO02414.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ufd1-like-RA | 163..1030 | 1..856 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:09:34 Download gff for
UFO02414.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ufd1-like-RA | 163..1030 | 1..856 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:09:34 Download gff for
UFO02414.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 11122130..11122864 | 136..856 | 96 | <- | Minus |
| 3L | 11122922..11123054 | 1..135 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:48:26 Download gff for
UFO02414.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 11115230..11115964 | 136..856 | 96 | <- | Minus |
| arm_3L | 11116022..11116154 | 1..135 | 97 | | Minus |
