UFO02417.5prime Sequence
1024 bp (862 high quality bases) assembled on 2009-01-13
> UFO02417.5prime
CAGTCGACATGGCATTCGGTGACTATCCAGCTGAGTACAACCCCAAGGTG
CACGGGCCCTACGACCCCGCTCGCTTCTACGGCAAAGCCGATGTGCCCTT
CGGCCAGGTCAAGCTGGGCGAGATCGGCGCCTGGCTGGGACGCCGCAACA
AGACCCCCAACGCTGTGGCCGGAGCTGTGAGCCGTGCCTGGTGGCGCTGG
CAGCACAAGTACGTGTTCCCAAAGCGCGCCGGGATCGCTCCCTTCTTCCA
GCTGACCGTCGCCAGCATGACGTTCTTCTATCTGATTAACTACACCAAGT
TGAAGCACCACAGGAACTACAAGTACCACGCAAGCTTTCTAGACCATTCG
TTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAA
TCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGAT
TCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCC
AGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGA
GCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGT
AATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGCATGATG
AACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATATT
TGCCCATGGTGAAAACGGGGGCGAAGAAGTTGTCCATATTGGCCACGTTT
AAATCAAAACTGGTGAAACTCACCCAGGGATTGGCTGAGACGAAAAACAT
ATTCTCAATAAACCCTTTAGGGAAATAGGCCAGGTTTTCACGTACCCGCC
ACATCTTGCGAATATTTTTTGTAGAACTGCCGAAATCGTCGTGGTATTCA
CTCCAGAGCGATGAAACGTTTCAGTTTGCTCATGAAAACGTGTAACAAGG
TGAACACTATCCATATCCCCAGCCCCACCGTCTTTTCATGCATACGAATC
GATGAACATTCATCAGCGGCCAGA
UFO02417.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:47:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4692-RA | 591 | CG4692-RA | 103..423 | 9..329 | 1605 | 100 | Plus |
| CG4692-RB | 548 | CG4692-RB | 60..380 | 9..329 | 1605 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:47:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24599256..24599499 | 329..86 | 1220 | 100 | Minus |
| 4 | 1348131 | 4 | 976898..977091 | 129..322 | 820 | 94.8 | Plus |
| 2R | 25286936 | 2R | 24599617..24599695 | 87..9 | 395 | 100 | Minus |
| 4 | 1348131 | 4 | 976824..976900 | 13..89 | 325 | 94.8 | Plus |
Blast to na_te.dros performed 2014-11-28 21:47:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Stalker4 | 7359 | Stalker4 STALKER4 7359bp | 6648..6701 | 907..959 | 114 | 70.4 | Plus |
| Stalker | 7256 | Stalker STALKER 7256bp | 6542..6595 | 907..959 | 114 | 70.4 | Plus |
UFO02417.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:17:48 Download gff for
UFO02417.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4692-RA | 71..403 | 1..335 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:39:53 Download gff for
UFO02417.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4692-RB | 56..385 | 1..335 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:40:54 Download gff for
UFO02417.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4692-RB | 56..385 | 1..335 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:40:54 Download gff for
UFO02417.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24599256..24599497 | 88..329 | 100 | <- | Minus |
| 2R | 24599617..24599702 | 1..87 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:39:53 Download gff for
UFO02417.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20486779..20487020 | 88..329 | 100 | <- | Minus |
| arm_2R | 20487140..20487225 | 1..87 | 96 | | Minus |
