UFO02418.5prime Sequence
1032 bp (876 high quality bases) assembled on 2009-01-13
> UFO02418.5prime
CAGTCGACATGTCATTTTCCGCCATCGGTGATTGCCAACTAATTTCGCAA
TTATACCAGTACAAGAAGCACCGCGTCATCTGCAGCGTCAAAGTTCTGCC
GACACCTGTGACCCATTTTGAGCGGGAATCCAAGAATGATTTCCATTGGA
TGACCGCGGATCGGTGGAGCCGGATTGAGTGTGGTCTATGGCGCCTGTTC
GAGAACCTGAAGCAGTGGCAGGATGCCTACCAACTGGACACCGAGCTCAT
TATCGATCACATCATCGTGCGCGTCCAGGCGACCAATAAGTCGCATCCTG
CAACGGTCGCTCTTCTGGCCGGTACGGAGTCCAGCTCCAAGGATCTCTGC
CTGGACCTACAGCTGCAGTACATAACACAAGAGGACACCACCATTGTGGA
CGTCATTCCCGCCAAGCGCGAGCTTGCCACGGAAGCAGAAACAAATGGCA
CCAGACCCACATCCCGCAAGATCCGCGTAGCAAACTCAGGATCCAAGCCA
AAAGCGGGCACACAATCGAAGCCCAAGCACATTGACGCCGACAACGAGGA
TGACAAGAGCTCCACCACGGCCAGCCAACCAACCAAGATCAAGAGCGAGC
GCAGGTCCATTTCCCAAGGAGGCGAAAAGGATAAAGCTTCTTCCAGCAGC
CCCAGTTCCTCGCAGCAGAGCAACCGCATTAAGCGATCGCACAGTCCATC
ACAGCAGAATTCCAGATCCAGCTCCGTTGAGGCCAAGCCTGCACGCCGCT
CCGGCCGATCGCCCATACGCCCGAGTCGATTCAAAACTTCGTAGTTGGCG
AGACCAGGAGCGGCAGAGCAGAGGACCCAGCCCAAAGTGAAACGAGTATC
GCCAGTGCCGCCAAAGATTTCAAGTGACACATGACGGAGGCGTCAATGCA
TGCAGCGCTGACAGCATGCTGAACCCGCCAAGCCGCGCGAGGTAGATTTT
GCAGCTTTCTAGACATCGTGGCGCGCGGCCCAGGTATTGCTATCTATCTA
ATCAAATTCTATCCCAACTAGCTAAGGAATCT
UFO02418.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:32:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4951-RA | 1074 | CG4951-RA | 61..1020 | 9..951 | 4360 | 97.9 | Plus |
| CG4951-RB | 1591 | CG4951-RB | 61..1019 | 9..950 | 4355 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:32:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 27953498..27953949 | 508..57 | 2260 | 100 | Minus |
| 3R | 32079331 | 3R | 27953143..27953342 | 707..508 | 985 | 99.5 | Minus |
| 3R | 32079331 | 3R | 27952993..27953085 | 798..707 | 415 | 98.9 | Minus |
| 3R | 32079331 | 3R | 27954002..27954052 | 59..9 | 255 | 100 | Minus |
| 3R | 32079331 | 3R | 27952846..27952925 | 874..798 | 250 | 96.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:32:26 has no hits.
UFO02418.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:17:47 Download gff for
UFO02418.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4951-RB | 61..1025 | 9..957 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:35:40 Download gff for
UFO02418.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4951-RA | 61..1020 | 9..951 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:12:36 Download gff for
UFO02418.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4951-RA | 61..1020 | 9..951 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:12:36 Download gff for
UFO02418.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 27952993..27953085 | 707..798 | 98 | <- | Minus |
| 3R | 27953144..27953341 | 509..706 | 99 | <- | Minus |
| 3R | 27953498..27953946 | 60..508 | 100 | <- | Minus |
| 3R | 27954002..27954052 | 9..59 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:35:40 Download gff for
UFO02418.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 23778715..23778807 | 707..798 | 98 | <- | Minus |
| arm_3R | 23778866..23779063 | 509..706 | 99 | <- | Minus |
| arm_3R | 23779220..23779668 | 60..508 | 100 | <- | Minus |
| arm_3R | 23779724..23779774 | 9..59 | 100 | | Minus |
