UFO02419.5prime Sequence
989 bp (815 high quality bases) assembled on 2009-01-13
> UFO02419.5prime
CAGTCGACATGGATCTGATCATTCTCGTGGGGATTGCCGTAGCTCTTTTA
GTTGTGATCGTCACACTGTACCTGCTGCAAAAGAAAAACGCCGCCCCAGA
AACCAAGGTAGCTGCAGCTCCTCAACGTGGCGTTCCACAGCGCGCCCAGG
AGGGTGTTCCGCGTCGGGCTCAAATAGCTCGAAATCAGCGCAATCGACTG
CGCCAGAATGTTCCAGCGGCTCCAGTCGCCGCGGCAGCTGGTGCTCTTCC
GGCTGCCGGCGACTCTGACCACGAGGACGAGGGTCAGGTCGATGGTGATG
AGGCACGTGTGCCCCAGGGAGCGGTGCTGGATGAGAAAATGGGTGCTAAG
AAGCGTGCCAAGATGGAGGCCAAGGAGCAGAAGCGGCTTCAGCGGGAGCA
GGAACTGCACGATCGCGAACAGCGCAAGGTGAAGGAGGCGAAGGAGGAGG
CGGAGCGCAAGCAGCAAGAAGACCTTGAGGCAGAGGCCGAGCGCAAGCGG
GTGGATGCCGAGCGCCTGGCCAAAGAGGAACGGGAGCGCAAGGAGCACGA
GGAGTACCTGAAGATGAAGGCTGCCTTCAGTGTGGAGGAAGAGGGCTTCG
AAGAGGGCGACGCCGACGACCAGGACAACCTCCTGGCCCGACTTCATTCA
GTACATTAGGGACAACAAGGTGGTGGTCCTAGAGGATCTGGGCCGTGGCC
CTTCAAATTAAAGACGCAGCAGTCATTGATCGCATCCAGAACCTGCAGCC
GATGGCACCCCTCACCGGCGTCATAGACGACGCGGCAAGTTCATCTATGT
TTCCGAGAGAGCTATTGTGTGTCAGTCATAAAACAACGCGACGCGTCTCA
TCGCGAGCTGCGAGAGCAGCACACTGATTACTGACGCCCAATTTCTGCGC
GCGCGAGCAGCTCCGCAGCTTTCTAGACATCGTGGCGCCGGCCAGTAATG
GCAATCTAATCTAATCTAACCTAATCCAACTAGCTAGGA
UFO02419.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:22:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5862-RA | 1090 | CG5862-RA | 82..986 | 9..898 | 3955 | 97 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:22:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 21215306..21216016 | 97..808 | 3225 | 99 | Plus |
| 3R | 32079331 | 3R | 21215160..21215250 | 9..99 | 455 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:22:31 has no hits.
UFO02419.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:17:46 Download gff for
UFO02419.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5862-RA | 81..974 | 1..880 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:26:34 Download gff for
UFO02419.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5862-RA | 74..967 | 1..880 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:14:21 Download gff for
UFO02419.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5862-RA | 74..967 | 1..880 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:14:21 Download gff for
UFO02419.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 21215152..21215250 | 1..99 | 96 | -> | Plus |
| 3R | 21215309..21216103 | 100..880 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:26:34 Download gff for
UFO02419.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 17040874..17040972 | 1..99 | 96 | -> | Plus |
| arm_3R | 17041031..17041825 | 100..880 | 96 | | Plus |
