UFO02420.5prime Sequence
1009 bp (882 high quality bases) assembled on 2009-01-13
> UFO02420.5prime
CAGTCGACATGTGGAAGGTTCTACTTATTTGTGTGGTGATGAGTGCTCTG
AATGAAGAGTCATCGGGAGCAAAAACGGCTCCGACCCGCAGACGACGAGC
ATATGCCGGCGGTTACGCCGGAGGGTATGCCAGCAGTGGAGGAGGAGCCG
GTGGCTATACGGGAAGCTATAACAGTGGCGGTGGACACAGCAGCTATGTG
GGTACCGGTGGTGGTGGCGGTAGTGGCTATTACGATTACGATGACTATGG
CGGCACTTCACCCAACTTTGGCATCATCGATCCGTATCTATTCCACCAGC
AGCTGACGAATCATATTTTGGCCCAGAACTTCGCCAACCAACAAGCTATA
ACTGGTCTGGCCACGGCTGGCAATGCTTATGCATCCGCGGATGCATCTCT
TGTCAACGACAACGATATTCGCATCCAGCAACAGATCGCCGCTCAACAGG
CCTACCACGACAATCTAGTGCGCCAGAATCGGTACAGAGGAGGCACCAGC
TCTAGCTTCAGTTCCAGCTCTGGATCCGGGTCTGGATCTGGATCGGGATC
CTACAACTCACATCGCTATGCACCCAGCTATGCATCAGCTTCCGGATCTA
TCGGTTCCAATGGCTATCGCCAGACGGCCTTCATTAGCCCATCCAATCCG
GCCTCTCCCAACATTGTGAATCGCTTTGGCGGCGGAAGCGGTGGTGGATC
CTCGTTCTCCAGCTCCAGCAGCTCCGGAGAGTGGTGGCAGCGGTGGTGGC
TACAGGCGTCTCGGTCTCGTCCTTCAGCCACAGCAACGGAGACGGACCAG
TCGACGTGAGCCAGACCACGTCACGACACGGAAAGATCACCTCGTATCGG
TGCACTCCGCAAGCTTCTAGACATCGTTGGCGGCGCGGGCCAGGTAGTGG
TCATATCATAATCAAATCATATCATATTCCACACTAGGCTAGGGAATCTT
GTCATGACTATGCTGATTCCACAATAAAACGCCGGCGCAACGAGCGTTCT
GAACAATTC
UFO02420.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:52:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17549-RD | 1159 | CG17549-RD | 176..1036 | 9..858 | 4040 | 98.7 | Plus |
| CG17549-RA | 1054 | CG17549-RA | 71..931 | 9..858 | 4040 | 98.7 | Plus |
| CG17549-RE | 979 | CG17549-RE | 406..856 | 419..858 | 1990 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:52:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 19388040..19388315 | 343..68 | 1380 | 100 | Minus |
| 2L | 23513712 | 2L | 19387537..19387769 | 651..419 | 1165 | 100 | Minus |
| 2L | 23513712 | 2L | 19387229..19387392 | 808..650 | 625 | 96.3 | Minus |
| 2L | 23513712 | 2L | 19387862..19387936 | 418..344 | 375 | 100 | Minus |
| 2L | 23513712 | 2L | 19388474..19388534 | 69..9 | 305 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:52:31 has no hits.
UFO02420.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:17:44 Download gff for
UFO02420.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17549-RA | 71..931 | 9..858 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:43:38 Download gff for
UFO02420.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17549-RA | 71..931 | 9..858 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:32:23 Download gff for
UFO02420.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17549-RA | 71..931 | 9..858 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:32:23 Download gff for
UFO02420.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 19387173..19387391 | 651..858 | 94 | <- | Minus |
| 2L | 19387538..19387769 | 419..650 | 100 | <- | Minus |
| 2L | 19387862..19387936 | 344..418 | 100 | <- | Minus |
| 2L | 19388040..19388313 | 70..343 | 100 | <- | Minus |
| 2L | 19388474..19388534 | 9..69 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:43:38 Download gff for
UFO02420.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 19387173..19387391 | 651..858 | 94 | <- | Minus |
| arm_2L | 19387538..19387769 | 419..650 | 100 | <- | Minus |
| arm_2L | 19387862..19387936 | 344..418 | 100 | <- | Minus |
| arm_2L | 19388040..19388313 | 70..343 | 100 | <- | Minus |
| arm_2L | 19388474..19388534 | 9..69 | 100 | | Minus |
