UFO02426.5prime Sequence
993 bp (832 high quality bases) assembled on 2009-01-13
> UFO02426.5prime
CAGTCGACATGACGAACGAAGATGTGGGCACCAACAGCGTCGCCGACCGC
CTACAGTTGGGTCCGCGCGAAGGCGTCACCTATCCGATCCAGATGAAGTA
CTGTGGCCACTGCACGATGCCCATTGAGTACTGCGAGTACTATCCGGAGT
ACGAGAAGTGCAAGGAGTGGCTGGAGCTCCACATGCCCGATGACTTCGAG
CGACTAAAGATTGAGGAGGAGGCTGCCGCCGCTGACGGGACGGATGACGA
CAAGAAGCGCCAGAAACGCGGTGGCAAGGGACTGTTGCGCGTCAAGAAGA
AAGAGGACGTGCCCAAGCGTATCTGCGTCTCGCGGGCGGCACGTGGCAAA
AAGAAGTCAGTGACCGTGGTCACAGGATTGAGCACTTTTGATATTGATCT
CAAGGTGGCCGCCAAGTTCTTTGGCACGAAATTTGCCTGCGGCTCCTCGG
TTACCGGAGACGACGAGATCGTCATTCAGGGTGACGTCAAGGATGACTTG
TTCGATGTCATACCCGAAAAATGGGCCGAGATCGATGAGGACGTCATCGA
GGATTTGGGCGATCAGAAGCGAACAGCAAGCTTTCTAGACCATTCGTTTG
GCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCAT
AATCACAACTAGCCTAGGAGATCCTTGTCATGACTAGTGCTTGGATTCTC
ACCAATAAAAAACGCCCGGCGGCACCGAGCGTTCTGAACAATCCAAGATG
GAGTTCTGAGGTCATTACTGGATTTATCACAGGAGTCCAGCGAGCTCGAT
ATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCAT
TAAGCATTCCTGCCGACATTGAAGCCATCACAACGCATGATTGAACCTGA
TCCGCAGCGGCATCAGCACTTGTCGCTTGCTATTAATATTTGCCATGTGA
AACCGGGGCGAAAAGTGGTCCTATTGCCACGTTAAATTCAACT
UFO02426.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:22:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9099-RB | 689 | CG9099-RB | 52..618 | 9..575 | 2835 | 100 | Plus |
| CG9099-RA | 729 | CG9099-RA | 92..658 | 9..575 | 2835 | 100 | Plus |
| Rcp-RB | 1080 | CG4875-RB | 838..1023 | 575..390 | 930 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:22:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 16885967..16886230 | 390..127 | 1320 | 100 | Minus |
| X | 23542271 | X | 16885617..16885802 | 575..390 | 930 | 100 | Minus |
| X | 23542271 | X | 16886318..16886437 | 128..9 | 600 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:22:23 has no hits.
UFO02426.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:17:39 Download gff for
UFO02426.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9099-RA | 84..658 | 1..579 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:26:31 Download gff for
UFO02426.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9099-RA | 87..661 | 1..579 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:14:17 Download gff for
UFO02426.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9099-RA | 87..661 | 1..579 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:14:17 Download gff for
UFO02426.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 16885967..16886228 | 129..390 | 100 | <- | Minus |
| X | 16886318..16886441 | 1..128 | 96 | | Minus |
| X | 16885613..16885801 | 391..579 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:26:31 Download gff for
UFO02426.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 16780000..16780261 | 129..390 | 100 | <- | Minus |
| arm_X | 16780351..16780474 | 1..128 | 96 | | Minus |
| arm_X | 16779646..16779834 | 391..579 | 98 | <- | Minus |
