UFO02428.5prime Sequence
1099 bp (973 high quality bases) assembled on 2008-12-21
> UFO02428.5prime
CAGTCGACATGCAGCAGGCGAATCTGGGCGACGGTGTGGCCACCGCCCGC
CTGCTGTCCCGATCCGACTGGGGTGCCCGGCTGCCCAAGTCCGTGGAGCA
CTTCCAGGGTCCCGCGCCCTACGTCATCATCCATCACTCGTACATGCCGG
CCGTGTGCTACTCCACTCCGGACTGCATGAAGAGCATGCGGGACATGCAG
GACTTCCATCAGCTGGAGCGCGGATGGAACGATATTGGTTATAGCTTTGG
CATCGGCGGCGATGGCATGATTTACACCGGCAGGGGATTCAATGTCATCG
GAGCTCATGCACCCAAGTACAATGACAAGAGCGTGGGCATTGTGCTGATC
GGAGATTGGAGAACCGAACTGCCGCCCAAGCAGATGCTGGATGCGGCCAA
GAACCTGATCGCCTTTGGCGTTTTCAAGGGCTACATTGACCCTGCCTACA
AGCTGCTGGGCCACCGACAGGTGCGGGATACCGAGTGTCCTGGCGGCCGC
CTGTTCGCCGAGATCTCCAGCTGGCCGCACTTTACCCACATAAACGACAC
CGAAGGCGTCAGCAGCACCACGGCGCCCGTCGTGCCCCACGTCCATCCAC
AGGCGGCAGCACCACAAAAAGCCGCACCAATCCCCGCCAGCTGCGCCCAA
GGTCGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTG
GTCATAATCATAATCATAATCATATCATAATCACAACTAGCCTAGGAGAT
CCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGG
CACCGAGCGTTCTGACAAATCAGATGGAGTTCTGAGGTCATTACTGGATC
TATCAACAGGAGTCCAAGCGAGCTCGAATCAATTACCGCCCCGCCCTGCC
CTCATCGCAGTACTGTGTAATTCATAGCATTCTGCCGACTGGAAGCCATC
CCAAACGGCATGATGACTGATCGCAGCGCCATCGCACTTGTCGCTGCGTA
TAATTTTGCCCATGGTGAAACGGGGCCGAGAGTGGCCCATTGGCCCGGTA
TCAACTGGGGACCTCCACAGGATGCTGACGAAACATTCCATACCTAGGA
UFO02428.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:41:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| PGRP-LB-RF | 1234 | CG14704-RF | 427..1073 | 7..654 | 3215 | 99.8 | Plus |
| PGRP-LB-RE | 925 | CG14704-RE | 118..764 | 7..654 | 3215 | 99.8 | Plus |
| PGRP-LB-RD | 926 | CG14704-RD | 119..765 | 7..654 | 3215 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:41:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11453452..11453808 | 363..7 | 1785 | 100 | Minus |
| 3R | 32079331 | 3R | 11453010..11453299 | 654..364 | 1405 | 99.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:41:26 has no hits.
UFO02428.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:11:26 Download gff for
UFO02428.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PGRP-LB-RA | 318..974 | 1..661 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:36:20 Download gff for
UFO02428.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PGRP-LB-RD | 115..771 | 1..661 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:11:48 Download gff for
UFO02428.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PGRP-LB-RD | 115..771 | 1..661 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:11:48 Download gff for
UFO02428.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11453004..11453299 | 364..661 | 98 | <- | Minus |
| 3R | 11453452..11453812 | 1..363 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:36:20 Download gff for
UFO02428.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7278726..7279021 | 364..661 | 98 | <- | Minus |
| arm_3R | 7279174..7279534 | 1..363 | 99 | | Minus |
