UFO02434.5prime Sequence
1040 bp (932 high quality bases) assembled on 2009-01-13
> UFO02434.5prime
CAGTCGACATGGAGAACCCGAACTGTGACCTCTACACCCTGGAGGCCAAC
ATGGCGAGTCAAGCGCTCCGGGAACTGACAGATGGCGAGGACAAGGATCC
CATTACCAAGCTGCGATTGCTGTGCCTCAGCCGCGGAGCAACAGGCATAC
TGGGATTGGGCAGGGCCTTCCGGGCGATGGACGACGATGGTAGCAAGGCT
CTGAATGAGGAGGAGTTCATCACTGGCATTAGGGACACCGGATTGGATGT
GTCGGAGGAGGAGATCAAGCAGATGTTCGCCACGTTTGATGAGGATGGCA
GTGGATCGATTAATATGACCGAGTTCCTGCTTAAACTAAGGCCCCCCATG
CCGCAGAGTCGTTTGAATATTATTGATCAGGCGTTCAACAAAATGGATCG
TGATGAAGATGGAGTAATTACCATTCAAGATCTTAAGAACGTGTACTCTG
TAAAAGAACATCCCAAGTACCAGTCTGGAGAAAAGTCTGAGGATGAAATT
CTTACCGACTTTTTGCACAACTTTGAGGGAGGTCGAGGAAACCTGGATGG
AAAGATAACCCGCGAGGAGTTTGTCAACTATTATGCCACCATTAGTGCCT
CAATTGACAACGATATGTTTTTTGATCTGATGATGCGACGTGCCTACGTC
ATGGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGG
TCATAATCATAATCATAATCATAATCATAATCACAACTAGCCTAGAGATC
CTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGC
AACCGAGCGTTCTGAACAAATCCAGATGAGTTCTGAGTCATTACTGATCT
ATCAACAGAGTCCAGCGAGCTCGATATCAAATTACGCCCCGCCTGCCACT
CATCGCAGTACTGTTGTAATCATAGCATTCTGCGAACATGAAGCATCCAA
ACGCATGATGAACTGATCCGCCAGCGCATCAGCACTTGTCGCTGCTATAT
AATTGCCCATTGAGAACCGGGGCAAATGTCAATTGCCGTA
UFO02434.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:33:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10126-RA | 907 | CG10126-RA | 136..782 | 7..653 | 3235 | 100 | Plus |
| CG10126-RB | 835 | CG10126-RB | 70..710 | 13..653 | 3205 | 100 | Plus |
| CG31345-RA | 984 | CG31345-RA | 217..347 | 89..219 | 190 | 76.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:33:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12855825..12856038 | 554..341 | 1070 | 100 | Minus |
| 3R | 32079331 | 3R | 12856456..12856607 | 164..13 | 760 | 100 | Minus |
| 3R | 32079331 | 3R | 12856241..12856367 | 285..159 | 635 | 100 | Minus |
| 3R | 32079331 | 3R | 12855669..12855769 | 653..553 | 505 | 100 | Minus |
| 3R | 32079331 | 3R | 12856130..12856187 | 341..284 | 290 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:33:31 has no hits.
UFO02434.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:17:42 Download gff for
UFO02434.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10126-RA | 107..758 | 7..660 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:36:20 Download gff for
UFO02434.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10126-RA | 136..787 | 7..660 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:13:13 Download gff for
UFO02434.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10126-RA | 136..787 | 7..660 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:13:13 Download gff for
UFO02434.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12856457..12856607 | 13..163 | 100 | | Minus |
| 3R | 12855825..12856037 | 342..554 | 100 | <- | Minus |
| 3R | 12856130..12856187 | 284..341 | 100 | <- | Minus |
| 3R | 12856243..12856362 | 164..283 | 100 | <- | Minus |
| 3R | 12855664..12855767 | 555..660 | 97 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:36:20 Download gff for
UFO02434.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8681965..8682084 | 164..283 | 100 | <- | Minus |
| arm_3R | 8682179..8682329 | 13..163 | 100 | | Minus |
| arm_3R | 8681852..8681909 | 284..341 | 100 | <- | Minus |
| arm_3R | 8681386..8681489 | 555..660 | 97 | <- | Minus |
| arm_3R | 8681547..8681759 | 342..554 | 100 | <- | Minus |
