UFO02436.5prime Sequence
742 bp (605 high quality bases) assembled on 2009-01-13
> UFO02436.5prime
CAGTCGACATGTCGCTTACCCCCTTTCTACGCCTGCCCTTAACCGATCTG
ACCGGGTGCCTAATTAACCACCAGACCTACGACAAGTGCGGAAAATTCGA
GATGAAAATGATGGAGTGCTTCGAGGCCTATGGCCTGGAGCGTGGAAAAC
GGGAGTGCGCCGACCTGATCTCCGACTTTCAGGAGTGCGTCGGCATGCAG
AAGCAACTGATGCGCTTCCATGCAATGCGAAACGAACGCTACAAGCAGTG
GCTCAAGGGGGAGCGTAAGGGACAAGAATTTTTTGCGGATCCCCCACGCG
TTGATGCCTACGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAG
GTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAACTAGCC
TAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACG
CCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTC
ATTACTGGATCTATCAACAGAGTCCAAGCGAGCTCGATATCAAATTACGC
CCCGCCCTGCCACCTCATCGCAGTACTGTGTAATTCATAAGCATTCTGCC
GACATGAAGCCATCCACAACGCATGATGACCTGATCGCCAGCGGCATCAG
CACCTTGTTCCGCCTTGCGTATAATATTTGCCATGTGAAACGGGGGCGAA
GAAGTTGTCAATTGCCACGTTTATCAAACTGGTGAACTCACC
UFO02436.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:28:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11455-RK | 798 | CG11455-RK | 413..715 | 9..311 | 1515 | 100 | Plus |
| CG11455-RJ | 869 | CG11455-RJ | 484..786 | 9..311 | 1515 | 100 | Plus |
| CG11455-RG | 678 | CG11455-RG | 293..595 | 9..311 | 1515 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:28:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 155572..155785 | 9..222 | 1070 | 100 | Plus |
| 2L | 23513712 | 2L | 155851..155947 | 215..311 | 455 | 97.9 | Plus |
Blast to na_te.dros performed 2014-11-28 23:28:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3S18 | 6126 | 3S18 DM23420 6126bp Derived from U23420 (g733531) (Rel. 48, Last updated, Version 3). | 1161..1212 | 85..136 | 107 | 67.3 | Plus |
UFO02436.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:17:41 Download gff for
UFO02436.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11455-RB | 228..538 | 1..311 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:02:44 Download gff for
UFO02436.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11455-RG | 285..595 | 1..311 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:02:46 Download gff for
UFO02436.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11455-RG | 285..595 | 1..311 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:02:46 Download gff for
UFO02436.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 155564..155784 | 1..221 | 98 | -> | Plus |
| 2L | 155858..155947 | 222..311 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:02:44 Download gff for
UFO02436.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 155564..155784 | 1..221 | 98 | -> | Plus |
| arm_2L | 155858..155947 | 222..311 | 100 | == | Plus |
