UFO02440.5prime Sequence
1140 bp (979 high quality bases) assembled on 2008-12-21
> UFO02440.5prime
CAGTCGACATGTGTCCGTCAAAATTTGTTGTCTACATACTGCTGATTTCC
GTAAGCGCCAATTCGAACTCGGAATCACAGGCGGGCCAGCTGCATTCGGC
GCCCAGTCAGAGGCAGGACCGACCATCGGACTTTCAGTTCCTGGTCACTG
GTGGCTATCGACCGGATACCAACGACCTGGTCAAGTACACGGTTTCGCTG
CGCATGGGCAAGCCGAAGAAGTTCTTCGGCGATAACCACTTTTGCGCGGG
AACGATCTTCAGCGAGCGGGCCATTCTCACGGCGGCCCATTGCATGTTCA
GCAATCGGCGAAAGCTGAAGGCCAAGAAGTTGATGGTCGTTGCCGGGACG
CCAAGGAGGCTGCTCAAGAGCAGTACAACACAGATTATTGAGGCCGAGGA
GCTATTGCCGCATCCCAAGTACAAGAAGGGCAAGTCGCAGAAGTACGACA
TAGGATTGATTCTGTTGGAGGCGGATCTCAGTCTGGGTGATGCCGTTGCC
AAAATACCTCTGTACAACAAGGTTCCGGTGGCCGGGGCCCCGTGCTCCAT
CGTCGGCTGGGGCACGGTCATTCAGTTCGGACCACTGCCAGATGAGGCCA
TCAACGGCGATATGCAGATCCTGCCGGACACCTTCTGCGAGAAGCTGCTG
GGCTGGTCCAACGCTGGCATGCTCTGCGCCAATGACAAGCACGACTCCGA
TGTGGACAGCTGCCAGGGCGACTCGGGCGGGCCCCTCATCTGTGACAACA
TGGTGACGGGCATCGTGTCCTTCGGAATGGGTTGCGGGCGAGCCTGATTC
GGCTGGGATCTACACCGATGTCTACCACCTCCGGGATTGGATCACCGAGA
ACTCCCTGCCCCCTAGGCACACGGTCCGTGTTGACGCTGTTTCTGCTGCT
GCTGCTCCTGCTCACTGGGATAATCGCAAGCTTTCTGAACCATTCGTTTG
GCCCGCGGGGCCCAGGTAAGTGTCATATCCATATCATAATCATATCATAA
TCACACTAGCCTAGGAGAATCCTGGTCATGAACTTATGCTTGATTCTCAC
CAATAAAACCGCCCGGCGGCCACCGAGCGTTCTGAACCATTCGATATGAA
GTTCTGAGGTCATTACCTGATCTATCACACGGGAGTTCAA
UFO02440.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:36:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3795-RB | 1247 | CG3795-RB | 47..958 | 9..922 | 4490 | 99.6 | Plus |
| CG3795-RA | 1115 | CG3795-RA | 47..958 | 9..922 | 4490 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:36:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 1709095..1709442 | 922..573 | 1620 | 98.9 | Minus |
| X | 23542271 | X | 1709841..1710136 | 304..9 | 1480 | 100 | Minus |
| X | 23542271 | X | 1709505..1709775 | 575..305 | 1355 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 20:36:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2626..2659 | 912..879 | 116 | 82.4 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2344..2377 | 912..879 | 116 | 82.4 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2347..2380 | 912..879 | 116 | 82.4 | Minus |
UFO02440.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:11:22 Download gff for
UFO02440.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3795-RA | 19..946 | 1..931 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:48:54 Download gff for
UFO02440.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3795-RA | 19..946 | 1..931 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:07:23 Download gff for
UFO02440.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3795-RA | 38..965 | 1..931 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:07:23 Download gff for
UFO02440.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 1709841..1710143 | 1..304 | 98 | | Minus |
| X | 1709095..1709439 | 576..922 | 98 | <- | Minus |
| X | 1709505..1709775 | 305..575 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:48:54 Download gff for
UFO02440.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1603128..1603472 | 576..922 | 98 | <- | Minus |
| arm_X | 1603538..1603808 | 305..575 | 100 | <- | Minus |
| arm_X | 1603874..1604176 | 1..304 | 98 | | Minus |
