UFO02442.5prime Sequence
1005 bp (873 high quality bases) assembled on 2010-09-10
> UFO02442.5prime
CAGTCGACATGTCCAAGTACTTATCTGTCCTACTGCTGTCCGCGGCACTC
GTTGGAGCTGCCAAGCCGGAAGATAATGAATCGTGCTATTCCTTCGCCGG
CGGCTCCGTTTATCCCGACCAGCCGAAGGGCGACCATCAGCTGCAGTACA
CCAAGGCAGTCATTTCCAAGCCAGCTCCGCAGTTCGAGGGCACCGCCGTG
GTTAATAAGGAGATTGTGAAGCTATCATTGTCCCAGTATCTAGGGAAATA
TGTGGTGCTACTCTTCTACCCACTGGACTTCACCTTTGTATGCCCAACGG
AGATCATTGCCTTCTCCGACCGCATCGCCGAGTTCAAGAAGATCAAGACC
GAGGTGATTGGCGTCAGCGTGGACTCGCACTTCACCCACTTGGCCTGGAT
AAACACGCCGCGCAAGGAGGGCGGCCTGGGCGACGTGAAGATCCCACTGC
TCTCCGATCTAACGCATAAGATCAGCAAGGACTACGGAGTCTACTTGGAG
TCCAGCGGTCATGCGCTGCGCGGTCTCTTCATTATCGATCAGACCGGAGT
GCTGCGACAGATCACCATGAATGATTTGCCCGTGGGACGCTCTGTGGACG
AGACTATTCGTCTGGTTCACGCCTTCCAGTATACGGACACCCATGGAGAG
GTTTGCCCAGCAGTTGGCGGCCAGGTGCCGATACGATCGTTCCCAATCCT
GAGGAGAAGACGAAGTACTTTGCCAAGAACAACGCAAGCTTTCTAGACCA
TTCGTTTGGCGCGCGGGCCCAGGTAAGTGTCATAATCATAATCATAATCA
TAATCATAATCACAACTAGCCTAGAGATCTGTCATGACTAGTGCTGATCT
CACATAAAAAACGCCGGCGCAACGACGTCTGAACAATCAGATGAGTCTGA
GTCATACTGATCTATCAACAGATCAAGCGAGCTCGAATCATACGCCCCGC
CTGCCACTCATCGCAGAACTGTGATCAATAGCATCCGCCGAATTGAAGCC
ATCAA
UFO02442.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:26:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Jafrac2-RC | 1007 | CG1274-RC | 59..785 | 8..733 | 3595 | 99.7 | Plus |
| Jafrac2-RB | 1178 | CG1274-RB | 230..956 | 8..733 | 3595 | 99.7 | Plus |
| Jafrac2-RA | 1047 | CG1274-RA | 99..825 | 8..733 | 3595 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:26:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 3043441..3043846 | 281..685 | 1965 | 99.5 | Plus |
| 3L | 28110227 | 3L | 3043051..3043205 | 8..162 | 775 | 100 | Plus |
| 3L | 28110227 | 3L | 3043272..3043389 | 163..280 | 590 | 100 | Plus |
| X | 23542271 | X | 13331215..13331420 | 246..451 | 340 | 77.7 | Plus |
| 3L | 28110227 | 3L | 3043904..3043952 | 685..733 | 245 | 100 | Plus |
| 3L | 28110227 | 3L | 26297190..26297250 | 8..68 | 245 | 93.4 | Plus |
| 3L | 28110227 | 3L | 26352859..26352919 | 8..68 | 245 | 93.4 | Plus |
| 3L | 28110227 | 3L | 26617408..26617468 | 8..68 | 245 | 93.4 | Plus |
| 3L | 28110227 | 3L | 26623291..26623351 | 8..68 | 245 | 93.4 | Plus |
| 3L | 28110227 | 3L | 27065954..27066014 | 8..68 | 245 | 93.4 | Plus |
| 3CEN | 744266 | 3CEN | 543958..544018 | 68..8 | 245 | 93.4 | Minus |
Blast to na_te.dros performed on 2014-11-26 14:26:49 has no hits.
UFO02442.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-09-17 09:58:47 Download gff for
UFO02442.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Jafrac2-RB | 226..956 | 1..733 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:32:37 Download gff for
UFO02442.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Jafrac2-RA | 95..825 | 1..733 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:30:43 Download gff for
UFO02442.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Jafrac2-RA | 95..825 | 1..733 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:30:43 Download gff for
UFO02442.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 3043042..3043205 | 1..162 | 97 | -> | Plus |
| 3L | 3043272..3043389 | 163..280 | 100 | -> | Plus |
| 3L | 3043441..3043846 | 281..685 | 99 | -> | Plus |
| 3L | 3043905..3043952 | 686..733 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:32:37 Download gff for
UFO02442.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 3043042..3043205 | 1..162 | 97 | -> | Plus |
| arm_3L | 3043272..3043389 | 163..280 | 100 | -> | Plus |
| arm_3L | 3043441..3043846 | 281..685 | 99 | -> | Plus |
| arm_3L | 3043905..3043952 | 686..733 | 100 | | Plus |
