UFO02446.5prime Sequence
1132 bp (915 high quality bases) assembled on 2008-12-21
> UFO02446.5prime
CAGTCGACATGTCTACGAGTTCCATGGAAAAACACCTTTTCAATCTAAAG
TTTGCCGTAAAGGAATTGGAACGAAACTCAAAGAAATGTGAGAAGGAGGA
GAAGCTGGAGAAGGCAAAGGCCAAGAAGGCGATTCAGAAGGGCAACATGG
ACGTGGCCCGCATCCACGCAGAGAATGCGATCCGCCAGAAGAACCAGGCG
GTTAACTACCTCAGGATGAGTGCCCGAGTGGATGCAGTGGCCAGTAGGGT
TCAGTCCGCACTCACCACCCGCAAGGTCACCGGCTCCATGGCCGGCGTGG
TCAAGGCCATGGATGCAGCTATGAAGGGTATGAACCTGGAGAAGATTTCC
TCCCTGATGGAGAAGTTTGAATCGCAGTTCGAAGACCTGGACGTCCAGAG
CTCGGTAATGGAGGGCACCATGTCCGACACGGTAACCACCTCGGTGCCTC
AGGGAGATGTCGACAATCTGCTCCAGCAAGTGGCCGACGAGGCTGGCCTC
GAACTCAACATGGAGCTGCCCAGCGGAGTTCAGAGCCAATCCGTTGGAGC
CTCGACAGCAGTGTCCCAAGAGCAAGACGAGCTCACCCAGCGACTGGCAC
GTCTCCGCCAGGCTGAAGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGG
GCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAA
CTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAA
AAAAACGCCCGGCGGCCACCGAGCTGTTCTGACAAATTCCAGATGGAGTT
CTGAGGTCATTACTGGATCTATCAACAGGAGTCTAAGCGAGCTCGAATAT
CAAATTACGCCCCGCCCTGCACTCATCGCAGTACTGTTGTAATTCATTAA
GCATTCTGCCGAACATGAAGCCATCACAACGAGATGATGACCTGAATCGC
AGCGGCATCAGCACTTGTCGCCTTGCGTAATAATATTTGCCCATGGTGAA
ACGGGGGCGAGAAGTTGTCCATATTTGGCCCGGTTTAATTCAAACCTGGT
GGAACTCACCCAGGGAATGGGCTGAATCAAAAACTATTCCCATTAACCTT
TAGGAAATAAGGCCAGGCTTCCCCGTACACGC
UFO02446.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:45:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Chmp1-RB | 1096 | CG4108-RB | 157..769 | 5..617 | 3065 | 100 | Plus |
| Chmp1-RA | 847 | CG4108-RA | 157..769 | 5..617 | 3065 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:45:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 18683222..18683808 | 617..31 | 2935 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:45:15 has no hits.
UFO02446.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:11:23 Download gff for
UFO02446.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Chmp1-RA | 152..770 | 1..621 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:53:06 Download gff for
UFO02446.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Chmp1-RA | 154..772 | 1..621 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:17:09 Download gff for
UFO02446.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Chmp1-RA | 154..772 | 1..621 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:17:09 Download gff for
UFO02446.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 18683218..18683808 | 31..621 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:53:06 Download gff for
UFO02446.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 18676318..18676908 | 31..621 | 99 | <- | Minus |
