UFO02452.5prime Sequence
1061 bp (940 high quality bases) assembled on 2008-12-21
> UFO02452.5prime
CAGTCGACATGTCTTATGGACAAGGCTATAACCCGTATGCCCAGCCCGGT
GGTGGCTATGCCCCGCCGCCAGGAGCATTTCCGCCGCAGAATGCCCAGGT
GTCTCCGCAGGCACAGCAATGGTTCTCCATGGTGGACCGCGACCGATCTG
GAAAGATAAACGCTTCCGAGTTGCAGGCGGCCCTGGTGAATGGGCGTGGC
GATCACTTCTCGGATAATGCCTGCAAGCTGATGATAAGCATGTTCGACAA
CGACGCCAGTGGTACCATCGATATCTATGAGTTCGAGAAGCTCTACAACT
ACATCAACCAATGGCTGCAAGTCTTCAAGACCTACGATCAGGACTCCTCT
GGACATATCGAGGAACAGGAGCTGACCCAAGCCTTCACCCAGATGGGCTT
TCGATTCTCGCCCGAATTCATAAACTTCCTGGTGAAGAAGAGCGACCCCC
AGGGCCACAAAGAGGTGTCCGTGGATCAGTTCATAGTGCTCTGCGTGCAG
GTGCAGCGTTTCACGGAGGCCTTCAGGCAGCGCGACACCCAACAGAATGG
AACCATCACCATTGGGTTCGAGGACTTCCTCACCGTGGCCATTGGCTGCT
CGTATGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGT
GGTCATAATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAG
ATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGC
GGCAACCGAGCGTTCTGAACAATCCAGATGGAGTTCTGAGTCATTACTGG
ATCTATCAACAGAGTCCAAGCGAGCTCGATATCAATTACGCCCCGCCCTG
CACTCATCGCAGTACTGTTGTAATTCATAGCATTCTGCCGACATGAAGCC
ATCACAACGCATGATGACCTGAATCGCAGCGCATCAGCACCTGTCGCTTG
CGTATAATATTGCCATGTGAAACGGGGCGAGAGTGTCTATGCAGTAATCA
ACTGTGACTCACCAGATGCTGAACAAAACATATCCATACTTAGAATGCAG
TTACCGAACGC
UFO02452.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:40:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17765-RA | 989 | CG17765-RA | 93..689 | 9..605 | 2970 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:40:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10481361..10481586 | 380..605 | 1115 | 99.6 | Plus |
| 2R | 25286936 | 2R | 10480323..10480543 | 18..238 | 1105 | 100 | Plus |
| 2R | 25286936 | 2R | 10481090..10481169 | 238..317 | 400 | 100 | Plus |
| 2R | 25286936 | 2R | 10481226..10481290 | 317..381 | 325 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:40:57 has no hits.
UFO02452.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:11:12 Download gff for
UFO02452.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17765-RA | 96..698 | 9..610 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:07:15 Download gff for
UFO02452.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17765-RA | 93..695 | 9..610 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:22:24 Download gff for
UFO02452.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17765-RA | 93..695 | 9..610 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:22:24 Download gff for
UFO02452.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10480323..10480542 | 18..237 | 100 | -> | Plus |
| 2R | 10481090..10481169 | 238..317 | 100 | -> | Plus |
| 2R | 10481227..10481290 | 318..381 | 100 | -> | Plus |
| 2R | 10481363..10481592 | 382..610 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:07:15 Download gff for
UFO02452.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 6367828..6368047 | 18..237 | 100 | -> | Plus |
| arm_2R | 6368595..6368674 | 238..317 | 100 | -> | Plus |
| arm_2R | 6368732..6368795 | 318..381 | 100 | -> | Plus |
| arm_2R | 6368868..6369097 | 382..610 | 98 | == | Plus |
