UFO02453.5prime Sequence
1109 bp (969 high quality bases) assembled on 2008-12-21
> UFO02453.5prime
CAGTCGACATGAACAGTCCTCTCGGGATCACTGCCCTAATTTGGGGCATT
CTCTGCCTTAGCTGTCCACCTTCTTCTCAAGCCGGAAGGGAAGATTGGAC
ACCACACGAGCTTCTGGCTTACGAACAGTTGACACAACAGGATTGCGGTG
TCCTATCGAATCTGATTCCCGCCCAAAGGCTTCGACGGCGGATCACCGGC
GGCAGGAAATCTTCGCTGTTGTCCCAGCCTTGGATGGCTTTTCTCCACAT
TTCCGGTGATATAGAGATGTGCCGCTGTGGAGGCTCTCTTCTCTCAGAAC
TCTTTGTTTTGACTGCCGCGCACTGCTTCAAAATGTGTCCCCGATCTAAG
GAGATAAGAGTGTGGCTGGGAGAGCTCGACATTAGTTCCACAAGTGACTG
CGTCACCTACAATTATCAACGGGTTTGCGCACTGCCCGTGGAGGAGTTTA
CCATCGACAAGTGGATTCTTCACGAGGAGTTTAACCTCTTCTATCCCGGG
TATGATATTGCTCTGATAAAACTAAACAAGAAAGTGGTCTTTAAAGATCA
CATACGACCCATATGTCTACCCCTGACGGATGAACTCTTGGCGTTTACCT
TGCAGCTGGGACAATCCTACATGGCTGTGGGCTGGGGGAGAACGGAAAGT
CGGCGCTTCGCCAACAGTACAATGGAGGTCCATATAAACACTGAGAAGTG
CACCGACGGCAGGGATACTTCCTTCCTTTGCGCCAATGGAGATTATGTGG
ACACGTGCACTGGGGACTCCGGTGGACCGCTCATATGGAAGACCACGTTT
GTTTGGCAAGGCTCGAACCGTACAATTTGGTGTGGTCAGCACTGGAAGCC
AAACTGCGGTGCTGGTCAGATGCCTACTACATGGAATGTACCCACCTATG
TGCCCTGAATACTCGCAAGATGGCAAATTATCCGGATTTAAGGAAGTTTG
CATAGGGCAAGCTTTCTAGACCATTCGTTGGCGCGCGGCCCAGTTAGTGG
TCATATCATAATCAATAATCATATTCATATCACACTAGCTAGAGATCTGT
CATGACTATGGCTGATCCACCCAATAAACCCCGGCCGACCGAACGTCTGA
CCATCAATT
UFO02453.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:24:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1773-RA | 1123 | CG1773-RA | 25..976 | 8..956 | 4530 | 98.8 | Plus |
| CG30002-RB | 1572 | CG30002-RB | 23..941 | 8..925 | 3160 | 89.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:24:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9707019..9707433 | 545..956 | 1665 | 96.6 | Plus |
| 2R | 25286936 | 2R | 9706291..9706583 | 8..300 | 1465 | 100 | Plus |
| 2R | 25286936 | 2R | 9705135..9705503 | 545..913 | 1190 | 90.6 | Plus |
| 2R | 25286936 | 2R | 9706755..9706948 | 353..546 | 970 | 100 | Plus |
| 2R | 25286936 | 2R | 9704871..9705064 | 353..546 | 835 | 95.4 | Plus |
| 2R | 25286936 | 2R | 9704406..9704698 | 8..300 | 775 | 84.3 | Plus |
| 2R | 25286936 | 2R | 9704755..9704807 | 301..353 | 265 | 100 | Plus |
| 2R | 25286936 | 2R | 9706640..9706692 | 301..353 | 265 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:24:13 has no hits.
UFO02453.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:11:10 Download gff for
UFO02453.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1773-RA | 2..962 | 4..960 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:31:08 Download gff for
UFO02453.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1773-RA | 15..979 | 1..960 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:08:38 Download gff for
UFO02453.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1773-RA | 15..979 | 1..960 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:08:38 Download gff for
UFO02453.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9706281..9706583 | 1..300 | 98 | -> | Plus |
| 2R | 9706640..9706691 | 301..352 | 100 | -> | Plus |
| 2R | 9706755..9706948 | 353..546 | 100 | -> | Plus |
| 2R | 9707021..9707433 | 547..956 | 97 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:31:08 Download gff for
UFO02453.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5593786..5594088 | 1..300 | 98 | -> | Plus |
| arm_2R | 5594145..5594196 | 301..352 | 100 | -> | Plus |
| arm_2R | 5594260..5594453 | 353..546 | 100 | -> | Plus |
| arm_2R | 5594526..5594938 | 547..956 | 97 | == | Plus |
