UFO02454.5prime Sequence
1133 bp (989 high quality bases) assembled on 2008-12-21
> UFO02454.5prime
CAGTCGACATGGTAGCCGGGATGCAGCGCAACTACAGGCACTATTTTAAG
CCGGGCGTGGCTGCCTTCGACCTGCACCATGCCCAGCCGGAAGCCATGGC
CGACGCCGAATTGGATGTCGCCGCTCCAGATGCATCGTGCCAGAGGTTGG
ACGTTTTCGGAAAGGAATCCAATCGGAATCAGGCAGTTTCAAGAAGATCC
CAAGGCAGGCCCACGAAGAGAACCAAAAACGGCACTGGAAATGGGGTCAG
CAAGCAACCTCGTCGTTTGATAAAGTCCCCGGAGGGGCACAAGAAGAAGG
AAGTTGGCAAGAAGAGTAACACAGCGGAGCCCATTATTTACCTGTTCGCC
CTTGTGTTTGTCTATCTGCTTCTGAAGGCCGCCTCGGACATCAACCAGCA
CTACAAGTCGCAGAACAAAGGGGACAAGCGACTGCGCCGGTGCTCGCTGC
AATCTTATGCCCAGATCCACAAGCAGGATCGCCGGTCATCAAAAGGTATT
TCACCAAAATCTTTGCCAAAGTTTGCAAGCTTTCTAGACCATTCGTTTGG
CGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATA
ATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCA
CCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATG
GAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGGCGAGCTC
GATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGGTAAT
TCATTAAGCATTCTGCCGACATGGAAGCCATCACAACGGCATGATTGAAC
CTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGC
CCATGGTGAAACGGGGGGCGAAGAAGTTGTCCATATTTGGCCCACGTTTA
AATCAAAACTGGTGAACCTCACCCAGGGATTGGCCTTGAAACGAAAACAT
ATTTCCAATAAACCCTTTAGGGAAATAGCCAGGTTTTCACCGTAACACGC
CACATCTTGCGCAATATATGTGTTACACTGCCGAATTCGTCTTGGATCAC
CTCGAGGCATGAAACGTCAGTTGCCTATGAAAC
UFO02454.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:11:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8248-RA | 1372 | CG8248-RA | 443..959 | 8..524 | 2585 | 100 | Plus |
| CG8248-RB | 1369 | CG8248-RB | 443..956 | 8..524 | 2530 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:11:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8919524..8919926 | 410..8 | 2015 | 100 | Minus |
| 2R | 25286936 | 2R | 8919353..8919467 | 524..410 | 575 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:11:48 has no hits.
UFO02454.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:11:09 Download gff for
UFO02454.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8248-RA | 436..966 | 1..535 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:19:53 Download gff for
UFO02454.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8248-RA | 438..968 | 1..535 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:53:04 Download gff for
UFO02454.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8248-RA | 438..968 | 1..535 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:53:04 Download gff for
UFO02454.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8919353..8919466 | 411..524 | 100 | <- | Minus |
| 2R | 8919524..8919930 | 1..410 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:19:53 Download gff for
UFO02454.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4806858..4806971 | 411..524 | 100 | <- | Minus |
| arm_2R | 4807029..4807435 | 1..410 | 99 | | Minus |
