UFO02456.5prime Sequence
1095 bp (874 high quality bases) assembled on 2008-12-21
> UFO02456.5prime
CAGTCGACATGCAGAGTGTTCTCAACACCGTCAAGGGCACAGCGCTCAAT
GTGGCCGAATATCTGACGCCCGTTTTGAAGGAATCGAAATTCCGTGAGAC
AGGTGTTCTCACTCCGGAAGAATTCGTGGCCGCCGGTGATCACCTGGTGC
ACCATTGTCCAACTTGGCAGTGGGCCGCTGGCGATGAGACCAAGACAAAA
CCCTACCTACCAAAGGATAAGCAATTCCTGATAACGCGCAATGTTCCCTG
CTATCGTCGCTGCAAGCAGATGGAATACGTCGGCGAGGAGACGCTGGTGG
AGGAGGAGTCCGGTGACGGCGGTTGGGTGGAGACTCATCAACTGAACGAT
GATGGCACCACCCAGCTGGAGGACAAGATCTGCGAACTGACAATGGAGGA
GACAAAGGAAGAAATGCACACTCCAGATAGCGACAAATCTGCGCCGGGCG
CTGGGGGCCAGGCTGAAGACGAGGACGACGACGAGGCTATTGACATGGAC
GATTTCGAGGAGAGCGGCATGCTGGAGCTGGTCGATCCGGCTGTAGCCAC
CACGACACGCAAGCCGGAGCCGGAAGCAAAGGCCAGCCCAGTGGCAGCCG
CATCGGGCGACGCGGAGGCCAGCGGTGACTCTGTGCTCCATACACGCACG
TACGACCTGCACATCAGCTATGATAAGTACTATCAGACGCCGCGACTCTG
GGTGGTGGGCTATGATGAGCAGCGCAAGCCACTGACCGTGGAACAGATGT
ACGAGGATGTCTCGCAGATCACGCGAAGAAAACTGTCACCATGGAGTCCC
ATCCGCATCTTCCAGGTCCCAATATGGCCTCTGTGCATCCCATGTCCGGC
ATGCGGATATCATGAAAGAAGATTAAACAAACGTAAGAGAGGCCGGCGTC
AGCTGGGAGTGCATTTTATACTTGATCCATATTCCTCAAATTCGTCAGAA
CCGTATACCAACCATCGAATACGATTTACGCAAAACTTCAAACATGTCTT
GCAAGCTTCTAGAACATCGTTTGGCCGCGCGGGCCCAAGTAATGGCTCTA
TCATATCATAATCATAAATCTAAATCCAACATAGCTTAGAGATCT
UFO02456.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:06:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Atg3-RA | 1221 | CG6877-RA | 128..1122 | 5..1000 | 4595 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:06:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 18749791..18750376 | 406..991 | 2320 | 96.8 | Plus |
| 3L | 28110227 | 3L | 18749547..18749739 | 216..408 | 965 | 100 | Plus |
| 3L | 28110227 | 3L | 18749336..18749479 | 73..216 | 705 | 99.3 | Plus |
| 3L | 28110227 | 3L | 18748814..18748890 | 5..81 | 370 | 98.7 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:06:55 has no hits.
UFO02456.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:11:07 Download gff for
UFO02456.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aut1-RA | 104..1104 | 1..1005 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:26:39 Download gff for
UFO02456.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aut1-RA | 125..1125 | 1..1005 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:49:26 Download gff for
UFO02456.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Atg3-RA | 125..1125 | 1..1005 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:49:26 Download gff for
UFO02456.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 18748811..18748889 | 1..80 | 96 | -> | Plus |
| 3L | 18749344..18749479 | 81..216 | 100 | -> | Plus |
| 3L | 18749548..18749738 | 217..407 | 100 | -> | Plus |
| 3L | 18749793..18750387 | 408..1005 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:26:39 Download gff for
UFO02456.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 18741911..18741989 | 1..80 | 96 | -> | Plus |
| arm_3L | 18742444..18742579 | 81..216 | 100 | -> | Plus |
| arm_3L | 18742648..18742838 | 217..407 | 100 | -> | Plus |
| arm_3L | 18742893..18743487 | 408..1005 | 96 | | Plus |
