UFO02459.5prime Sequence
1117 bp (881 high quality bases) assembled on 2008-12-21
> UFO02459.5prime
CAGTCGACATGGCCCGGTTGAAGCTGAGGAAACTGGAGGAGTACCTGCAG
GGCGTTGACGGTTTCGAGCAGCCCAAGATCCTGTTGGAACAGTACCCCAC
TCCGCCGCACATAGCCGCGTGCATGGCTCATCACATGCAGTCGCAGCACG
AGGACATCGAGGGAAAGCTGGTGGGAGATTTGGGCTGCGGCTGCGGAATG
CTCAGCATTGCTTCCACTCTGCTGGGCGCCCAGCTCACGGTGGGCTTCGA
ACTGGACGGCGATGCCGTGGACACCTTTAGGGGCAATGTGGTGGAGATGG
AGCTACCCAATGTTGACTGCGTGCGGGCGGATGTGCTGCAGCTGATCGGC
AGCAAGTGGGAGAAGTCCTTTGACACGGTGCTGATGAATCCCCCATTCGG
CACGAAACACAATGCCGGCATGGACATGCGGTTTCTGGAGGTGGCCCTAC
GGTTGGCCAACAGAGCAATTTACTCCCTACACAAGACGTCGACACGGTCG
TACATTCAGAAAAAGGCACTGGAATGGGGCGCCCGCGGCTCAGTGGTCGC
CGAACTCCGGTACAACATCGACGCCAGCTACAAGTTTCACAAGCAGAAGT
CGAAGGATATTGAGGTGGACTTCTGGCGCTTTGAAATCGGCACGGAAGCA
AGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAA
TCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGT
CATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCGGGCGGCGACCG
AACGTTCTGAACAAATCCAGATGGGAGTTCTGAGGTCATTACTGGATCTA
TCAACAGGAGTCCAAGCGAGCTCGATATCAAATTAACGCCTCCGCCCTGC
CCCTCATCGCAGTACTGTTGTAATTCATTAACCTTCTTGCCGACATGGGA
AACCATCAAAATCGGCATGAATGAACTTGAATCGCTAGCGGGCATCAGAA
CTTTGTCCGCTTGCTATAAATATTGGCCCTTGGTGAAAACGGGGGTGAAA
AGTTGTCCATATTGGCCAGTTTAATTCAACTGGTGAACTCACCCAGGATT
GGCTGAAACGAAAAACA
UFO02459.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:36:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42374-RB | 1635 | CG42374-RB | 903..1541 | 9..647 | 3165 | 99.7 | Plus |
| CG42374-RA | 1227 | CG42374-RA | 495..1133 | 9..647 | 3165 | 99.7 | Plus |
| CG9666-RD | 1635 | CG9666-RD | 903..1541 | 9..647 | 3165 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:36:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19264956..19265445 | 9..498 | 2420 | 99.6 | Plus |
| 3L | 28110227 | 3L | 19266593..19266744 | 496..647 | 760 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:36:53 has no hits.
UFO02459.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:11:15 Download gff for
UFO02459.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42374-RA | 890..1538 | 1..647 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:48:52 Download gff for
UFO02459.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42374-RA | 485..1133 | 1..647 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:07:22 Download gff for
UFO02459.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9666-RD | 893..1541 | 1..647 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:07:22 Download gff for
UFO02459.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19264946..19265443 | 1..496 | 98 | -> | Plus |
| 3L | 19266594..19266744 | 497..647 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:48:52 Download gff for
UFO02459.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19258046..19258543 | 1..496 | 98 | -> | Plus |
| arm_3L | 19259694..19259844 | 497..647 | 100 | == | Plus |
