Clone UFO02462 Report

Search the DGRC for UFO02462

Clone and Library Details

Library:UFO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2008-06-20
Comments:BD Creator expression clones with C-terminus FLAG HA tag for transgenic expression using PhiC31 integrase system
Original Plate Number:24
Well:62
Vector:pUAST-CFLAGHA-BD-PHI
Associated Gene/TranscriptCG11836-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

UFO02462.5prime Sequence

1134 bp (959 high quality bases) assembled on 2008-12-21

> UFO02462.5prime
CAGTCGACATGGCACGAATCGTGTACGACGGCAAGTTCCATTGCGGAGGA
TCCTTACTGACGAAGGATTACGTTCTATCGGCCGCTCACTGCGTGAAGAA
ACTGCGAAAATCCAAAATCAGAGTCATATTCGGCGACCACGATCAAGAGA
TCACCTCGGAGTCACAGGCCATCCAACGTGCGGTTACGGCTGTGATAAAG
CACAAGAGCTTTGACCCCGATACATACAACAACGACATTGCCCTGTTGCG
ACTTCGCAAGCCTATATCGTTTTCTAAAATTATAAAGCCAATCTGCCTAC
CGCGCTATAATTACGACCCCGCAGGTCGCATTGGAACGGTTGTCGGCTGG
GGACGGACATCCGAGGGAGGAGAACTACCATCCATAGTTAATCAAGTTAA
GGTGCCAATCATGTCCATCACGGAATGCCGAAATCAAAGATACAAAAGTA
CTCGAATTACCTCATCCATGTTGTGTGCGGGTAGGCCTTCCATGGACTCA
TGCCAGGGCGACAGTGGAGGACCGCTGTTGCTATCCAATGGCGTTAAGTA
TTTCATCGTCGGCATTGTGTCCTGGGGCGTTGGTTGCGGCCGCGAAGGAT
ATCCGGGTGTTTACTCCAGAGTGAGCAAATTCATACCGTGGATTAAGTCT
AATTTAGAAAATACCTGCCTGTGTTCAGCAAGCTTTCTAGACCATTCGTT
TGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATC
ATAATCACAACTAGCCTAGGAGATCCTGGTTCATGACTAGTGCTTGGATT
CTCACCAAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAAACAAATC
CAGATGGAGTTCTGAGGTCATTACTGGGATCTATCAACAGGAGTCCAAGC
GAGCTTCATAATCAAATTACCGCCCCGCCCTGCCACTCATCGCAGTACTG
TTGTAATTTCATTAAGCATTCTGCCGACTTGAAAGCCATTACAAACGGCA
TGATGAACTGATCGCAGCGGCATCAGCACCTGGTCGCCTTGCTTAATAAT
TGGCCCATGGGTGAAACGGGGGGCGAAGAGTTGTCCATATGGCCACGGTT
AATCAAACTGGGTGAAACTCACCCAGGATTGGGC

UFO02462.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:17:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG11836-RF 1102 CG11836-RF 317..985 9..677 3345 100 Plus
CG11836-RE 1076 CG11836-RE 291..959 9..677 3345 100 Plus
CG11836-RI 1101 CG11836-RI 316..984 9..677 3345 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:17:08
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25071810..25072127 9..326 1590 100 Plus
3R 32079331 3R 25072318..25072595 400..677 1390 100 Plus
3R 32079331 3R 25072185..25072266 323..404 410 100 Plus
Blast to na_te.dros performed on 2014-11-28 19:17:09 has no hits.

UFO02462.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:11:01 Download gff for UFO02462.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11836-RC 305..973 9..677 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:23:39 Download gff for UFO02462.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11836-RI 316..984 9..677 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:11:51 Download gff for UFO02462.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11836-RI 316..984 9..677 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:11:51 Download gff for UFO02462.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 25071810..25072125 9..324 100 -> Plus
3R 25072187..25072263 325..401 100 -> Plus
3R 25072320..25072595 402..677 100 == Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:23:39 Download gff for UFO02462.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20897532..20897847 9..324 100 -> Plus
arm_3R 20897909..20897985 325..401 100 -> Plus
arm_3R 20898042..20898317 402..677 100 == Plus