UFO02465.5prime Sequence
1121 bp (972 high quality bases) assembled on 2008-12-21
> UFO02465.5prime
CAGTCGACATGTTGGCCTCCGCCTGGCGCAGCGTGGCCACCTCCGTGGAG
ACCCAGTTGACGGCCACCTACTTCCGAGTGCAAAAACTACGAAAAGTCGG
CTTCAGAGGCATGCACAGCACATTGGAGGACGTGCAGCTGGAGGGCATGG
AGATCAAGATCCTGCCGGCCCTGCAGGATAACTATATGTATCTGATTGTA
GACACGAAGACGCGCGAGGCGGCCGTGGTGGATCCCGTGGAGCCGGAGCT
GGTCATTATAACGGTGCAGGAGCAGCAGCTGACCCTCAGCAAGGTGCTGA
CCACGCACCATCACTGGGACCACGCCGGTGGCAATGAAAAGCTGCTCAAG
CTGTGGGAGAAGGAGCTGGACGTGTATGGCGGCGATGACCGCATCGGGGC
ATTGAACAAAAAGGTTCAGCAGGACGACACCTTCACCATTGGTGGTCTGC
ATGTCAAGTGCTTGTCCACGCCGTGCCACACTACCGGCCACATCTGCTAC
CACATCACCGCGCAGCAGGGCAGCGGCGAGGGAGCCGTCTTCACCGGCGA
CACCCTCTTCCAGGGCGGATGCGGCCGCTTCTTCGAGGGCACTCCCGAGG
AAATGTACGAGGCGCTGTGCACAAAGCTCTCCGCCTTGCCGGACGCCACA
AAGGTGTTCTGTGGCCACGAGTACACGCTGCAGAACATGAGCTTCGCCCG
TCACGTCGAGCCCGACAACGAGGTCATCCAGCAGAGGATCGAGTGGGCCC
AGCACCGGCGCGCCTCCCAGGATCCCACTGTGCCCTCCACCATTGGCGAG
GGAGAGTCCTGGGAACCCCTTTATGCCGCGGTCACGAAGCCCACCGTGCA
GAAGCACGCTGGCGGGAGCCACCGATCCCGTCGTCACCATGGGCAGCTGC
GCAAGGAAAAGGACACCCTTCAAGCCGCAAGCTTTCTAGACCATCCGTTT
GGGCGCCGCGGGCCCAGGTAGGTGGTTCATATCATATCATAATCATATAT
AATCAACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATCTC
CACAATAAAAACGCCGGCGCAACCGAGCGTCTGAACAATCCCGAATGGAT
TCTGAGTCTACTGGATCTTCA
UFO02465.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:38:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4365-RA | 1092 | CG4365-RA | 84..994 | 9..923 | 4325 | 98.7 | Plus |
| CG4365-RC | 1231 | CG4365-RC | 308..1148 | 79..923 | 3975 | 98.6 | Plus |
| CG4365-RB | 1013 | CG4365-RB | 75..915 | 79..923 | 3975 | 98.6 | Plus |
| CG4365-RC | 1231 | CG4365-RC | 109..178 | 9..78 | 350 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:38:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20799141..20799978 | 77..917 | 3855 | 98.6 | Plus |
| 3L | 28110227 | 3L | 20798790..20798859 | 9..78 | 350 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:38:08 has no hits.
UFO02465.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:10:58 Download gff for
UFO02465.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4365-RA | 75..998 | 1..926 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:09:41 Download gff for
UFO02465.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4365-RA | 75..998 | 1..926 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:09:29 Download gff for
UFO02465.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4365-RA | 75..998 | 1..926 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:09:29 Download gff for
UFO02465.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20798781..20798859 | 1..78 | 95 | -> | Plus |
| 3L | 20799143..20799978 | 79..917 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:09:41 Download gff for
UFO02465.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20791881..20791959 | 1..78 | 95 | -> | Plus |
| arm_3L | 20792243..20793078 | 79..917 | 98 | == | Plus |
