UFO02468.5prime Sequence
1125 bp (904 high quality bases) assembled on 2008-12-21
> UFO02468.5prime
CAGTCGACATGGCACAAGTCGCTTTTCTGGACAACCTGCTTAGGGAGTAC
CTAGTTTTTCGAGGTTTCTCCAGCACCTTGAAGGCCCTCGACTTGGAGCA
GCGCACTGAGAAGGACCAGCACTTCCGTGCGGAACGAATTCTGGAGCAAT
TCAATAATGCTGTGCAAGCGTCTGACCTTCAGGCTCTCAGGAGTTTGTGG
TTTCACCTGGACAACAACATATTTTCCAAGCTGGAGCATACGTATGCCGT
TGCTGTCAAGAAACTGGAAAACAGCCTCCTAAAATACTACCTGGTGACCG
CCTACAGCAGCAATCGACCTGAGAAGGTGTCCGAGTTCTTTAACAAGTTG
GCGGGCGATCTGCAGCAGCAAAGCGAGTGGAAGGATTGGTTCTACTTTCC
GTTTTGCAAGAATGCCGAGGAGTCGCCCACTTTTGCCCTGTTCTTCACCA
AGCAATGGCAGGATACGTTGCTTCTGTCGCTGCGCAACTTCCTGACCACC
GTATACCAGTGCCTGCCGCAGCCCACATTCGTGCGGGCGGAGCAGGAAGC
GGCCCACATGCAGCGTCTCAGCGAAGACAACGCTGGGCTACGCACTCGGG
TACTCAACTTTGCAGCAGGAGCTGAACCAGATGACCCATAAACAATCAGG
AACTGCGGCCGCAAGCGGAAGTTCACTTGGCGGTGGGGTCGACAATGGAG
CCCGCAGACGCAGCGTGTATCGCCAGCAGCAGAGCCTGAGCGACATTCTG
CCTTTCGACATCAGTCCTCCCGGGACACATAGTCGATGATTTCTGCATCA
TTGCTTTCCGAGGCGAACAGCGTGAGCCAGGCCAGCGACGCACAGGCGCG
CAGCCTTAAGCAGTTAATCCCGTAATATTGGATCGGGCAGCTCGCCTGTG
ATGGGCGCAAGGACCAGACAGCAGTTCTCTGGGAGAAAGTCCACCAACGC
AGTCTGGCAGTCTGGGACGCAGTTGGATGCAAGCTTTCTAGACCATCGTT
GGCGCGCGGGGCCAGGTAGTGGTCATATCATAATCATAATCATAATCATA
ATCACACTGCCTAAGAGGATCTCTGGTATGAGACTATGCTGGAATTCACC
AATAAAAAACGCCCGGCGGCACGGA
UFO02468.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:06:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6005-RB | 1456 | CG6005-RB | 87..1057 | 9..978 | 4620 | 98.9 | Plus |
| CG6005-RA | 1313 | CG6005-RA | 87..1057 | 9..978 | 4620 | 98.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:06:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 19022857..19023442 | 978..394 | 2470 | 98.1 | Minus |
| 3R | 32079331 | 3R | 19023701..19023944 | 252..9 | 1220 | 100 | Minus |
| 3R | 32079331 | 3R | 19023504..19023645 | 393..252 | 710 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:06:42 has no hits.
UFO02468.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:10:55 Download gff for
UFO02468.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6005-RA | 73..1049 | 1..978 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:26:30 Download gff for
UFO02468.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6005-RA | 73..1049 | 1..978 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:49:19 Download gff for
UFO02468.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6005-RA | 81..1057 | 1..978 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:49:19 Download gff for
UFO02468.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 19023701..19023950 | 1..252 | 98 | | Minus |
| 3R | 19022857..19023442 | 394..978 | 98 | <- | Minus |
| 3R | 19023504..19023644 | 253..393 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:26:30 Download gff for
UFO02468.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 14848579..14849164 | 394..978 | 98 | <- | Minus |
| arm_3R | 14849226..14849366 | 253..393 | 100 | <- | Minus |
| arm_3R | 14849423..14849672 | 1..252 | 98 | | Minus |
