UFO02470.5prime Sequence
1118 bp (974 high quality bases) assembled on 2008-12-21
> UFO02470.5prime
CAGTCGACATGGTGGACGACAGCACTCGAAAAACGTTGAGCAACATTCCG
CTGCTGCAGATTCGCGCTGGTCCGCGCGAAAAGGATGTGTGGGTGCAGCG
GCTCAAGGAGGAGTACCAGGCACTAATTAAGTATGTGGAGAACAACAAAC
AGTCCGGCAGCGACTGGTTCCGTCTGGAATCCAACAAGGAGGGCACCAAG
TGGTTCGGAAAGTGTTGGTACATGCACAACCTGTTAAAGTACGAGTTCGA
CGTGGAGTTCGACATTCCAGTGACGTACCCAACCACCGCGCCCGAGATTG
CCCTGCCAGAACTTGACGGCAAGACAGCGAAGATGTACCGTGGTGGCAAG
ATCTGTCTGACGGATCACTTTAAGCCACTGTGGGCACGCAATGTTCCCAA
GTTTGGGATCGCCCACGCTATGGCTCTGGGTCTTGCTCCCTGGCTGGCCG
TGGAGATTCCGGATCTCATCGAGAAGGGAATCATTACGTACAAGGAAAAG
GCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAAGTGGTC
ATAATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCC
TGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCA
ACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGAT
CTATCAACAGGAGTCCAAGCGAGCTCGATATCAAAATTACGCCCCGCCCT
GCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGG
AAGCCCATCACAAACGGCATGATGAACCTGAACGCCAGCGGCATCACACC
TTGTCGCCTTGCGTATAATATTTGCCCATGGTGAAACGGGGGCGAAGAAG
TTGTCCATATTGGGCCACGTTTAATCAAACCTGGTGAAATTCACCGAGGG
ATTGGCTGAGACGAAACATATTCTCATTAACCCCTTAGGGAATTAGGCCA
GGTTTCCACCGTTACACGCCACATCTTGCGATATATTGTGTAGAACCTGC
GGAATCCGTCTGGTATTCACTCCAGAGCGAGAACGTTCAGTTGGCTCTGG
AAACCGTGTAACATGGTG
UFO02470.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:50:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8386-RA | 656 | CG8386-RA | 97..592 | 5..500 | 2465 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:50:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16007087..16007388 | 431..130 | 1510 | 100 | Minus |
| 2R | 25286936 | 2R | 16007445..16007571 | 131..5 | 620 | 99.2 | Minus |
| 2R | 25286936 | 2R | 16006957..16007025 | 500..432 | 345 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:50:40 has no hits.
UFO02470.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:11:04 Download gff for
UFO02470.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8386-RA | 81..589 | 1..511 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:10:24 Download gff for
UFO02470.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8386-RA | 93..601 | 1..511 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:27:41 Download gff for
UFO02470.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8386-RA | 93..601 | 1..511 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:27:41 Download gff for
UFO02470.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16006957..16007025 | 432..500 | 100 | <- | Minus |
| 2R | 16007087..16007386 | 132..431 | 100 | <- | Minus |
| 2R | 16007445..16007575 | 1..131 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:10:24 Download gff for
UFO02470.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 11894462..11894530 | 432..500 | 100 | <- | Minus |
| arm_2R | 11894592..11894891 | 132..431 | 100 | <- | Minus |
| arm_2R | 11894950..11895080 | 1..131 | 97 | | Minus |
