UFO02471.5prime Sequence
1133 bp (957 high quality bases) assembled on 2008-12-21
> UFO02471.5prime
CAGTCGACATGCAGGATTTTCTGCCTTCGCTGGATGTTCTCTTTCTTGGA
CTACCAGGCCACTACTCGGTAGCGCTGGTCACCCTTCTGCTGTGCGTTTT
GGTCGCCTTCTACTTCGCCAACATCTTCAAGGACAAAGGCGAACTGGAGG
ACGAGGGCCTGGGGGCCGACGAGCCGCGCGATGAGGAGGATTCCGAGTCA
CGGACTCCGCAAGGGGAGGAAACCGACGATGACGAGGCCTACGAAGAGAA
CTCCACCGAAAGCGAAGTTGAGCTAATCGAGGAACAGCTGCCCGAGCACA
GCTACAACCACCTGATGGGCCAGCTCAAGGCCAAGAGGCTCCAGCATAAG
ATGGAGAAGACCCTGACTCCCAGCCAAATCGAGGAGGAGCGCCGAATAGA
GCGCGAGCAGCTGGCGGCCATCTTTGAGCTCCTGCGCAAACAGGAGGCGG
AATTGAACCTCCAGGACCGAATAAGCGACCAGGATCTCAAGCAGCAGGTG
CGGCTCTATCGCGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCA
GGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAACTAGC
CTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAAC
GCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGT
CATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTAC
GCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCT
GCCGACATGAAAGCCATCACAAACGGCATGATGACCCTGAATCCGCCAGC
GGCATCAGCCACCTTGTCGCCTTGCGTATAATATTTGCCCATGGTGAAAA
CGGGGGGCGAAGAAAGTTGTCCAATATGGCCACGTTTTAATCCAAACTGG
TGAAACTCACCAGGGGATTTGGCTGAGACGAAAAACATATTTCTCAATAA
CCCTTTGAGGGAAATAGGCCAGGTTTCACCGTAACCCGCCACATTCTTGC
GATATATGTGTAAGAAACTGCCGGGAATCGGTCGTGTATTCCTCCAAGCG
AGTGAAACGTTCAGTTGTGTCTATAGGAGAACG
UFO02471.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:06:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7407-RA | 1049 | CG7407-RA | 67..575 | 4..512 | 2530 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:06:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21823726..21824097 | 141..512 | 1860 | 100 | Plus |
| 3L | 28110227 | 3L | 21823527..21823664 | 4..141 | 675 | 99.3 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:06:49 has no hits.
UFO02471.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:11:02 Download gff for
UFO02471.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7407-RA | 59..576 | 1..517 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:26:35 Download gff for
UFO02471.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7407-RA | 63..580 | 1..517 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:49:24 Download gff for
UFO02471.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7407-RA | 63..580 | 1..517 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:49:24 Download gff for
UFO02471.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21823523..21823663 | 1..140 | 97 | -> | Plus |
| 3L | 21823726..21824101 | 141..517 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:26:35 Download gff for
UFO02471.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21816623..21816763 | 1..140 | 97 | -> | Plus |
| arm_3L | 21816826..21817201 | 141..517 | 99 | -> | Plus |
